ENSLACG00000005413 (Latimeria chalumnae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLACG00000005413 T097000_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.823 0.974
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.823 0.974
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.823 0.974
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.823 0.974
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.823 0.974
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.823 0.974
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.823 0.974
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.823 0.974
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.823 0.974
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.823 0.974
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.823 0.974
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.823 0.974
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.819 0.965
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.807
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000006099 C2H2 ZF 128 150
ENSLACP00000006099 C2H2 ZF 159 181
ENSLACP00000006099 C2H2 ZF 185 207
ENSLACP00000006099 C2H2 ZF 213 235
ENSLACP00000006099 C2H2 ZF 241 262

Links

Other C2H2 ZF family TFs
Other Latimeria chalumnae TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G40020 Brachypodium distachyon BRADI4G40020 N 0.000
MLOC_38921 Hordeum vulgare MLOC_38921 N 0.000
OB12G16010 Oryza brachyantha OB12G16010 N 0.000
ORGLA12G0060700 Oryza glaberrima ORGLA12G0060700 N 0.000
OGLUM12G07580 Oryza glumaepatula OGLUM12G07580 N 0.000
BGIOSGA036435 Oryza indica BGIOSGA036435 N 0.000
ONIVA12G05970 Oryza nivara ONIVA12G05970 N 0.000
OPUNC12G06140 Oryza punctata OPUNC12G06140 N 0.000
OS12G0225300 Oryza sativa OS12G0225300 N 0.000
Pavir.Cb01881 Panicum virgatum Pavir.Cb01881 N 0.000
Pavir.J33683 Panicum virgatum Pavir.J33683 N 0.000
Sb08g001435 Sorghum bicolor Sb08g001435 N 0.000
Traes_5AS_1986BD81F Triticum aestivum Traes_5AS_1986BD81F N 0.000
Traes_5BS_96DCE1858 Triticum aestivum Traes_5BS_96DCE1858 N 0.000
Traes_5DS_61EE28B2A Triticum aestivum Traes_5DS_61EE28B2A N 0.000
TRIUR3_17567 Triticum urartu TRIUR3_17567 N 0.000