PRDM4 (Monodelphis domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMODG00000001448 T099734_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.819 0.964
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.819 0.964
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.819 0.964
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.819 0.964
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000001757 C2H2 ZF 620 642
ENSMODP00000001757 C2H2 ZF 648 670
ENSMODP00000001757 C2H2 ZF 676 698
ENSMODP00000001757 C2H2 ZF 704 726
ENSMODP00000001757 C2H2 ZF 732 754
ENSMODP00000001757 C2H2 ZF 760 781

Links

Other C2H2 ZF family TFs
Other Monodelphis domestica TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000016174 Ailuropoda melanoleuca ENSAMEG00000016174 I 0.819
Alligator_sinensis_CCG012513.1 Alligator sinensis Alligator_sinensis_CCG012513.1 I 0.825
ENSAPLG00000009846 Anas platyrhynchos ENSAPLG00000009846 I 0.825
PRDM4 Anolis carolinensis ENSACAG00000014907 I 0.815
Afo_R011067 Aptenodytes forsteri Afo_R011067 I 0.825
ENSP00000228437-D1 Bos grunniens ENSP00000228437-D1 I 0.819
PRDM4 Bos taurus ENSBTAG00000012999 I 0.819
Brh_R007685 Buceros rhinoceros Brh_R007685 I 0.825
PRDM4 Callithrix jacchus ENSCJAG00000015261 I 0.819
Aan_R008654 Calypte anna Aan_R008654 I 0.825
PRDM4 Canis familiaris ENSCAFG00000001788 I 0.819
ENSCPOG00000022385 Cavia porcellus ENSCPOG00000022385 I 0.822
Cmyd_10007196 Chelonia mydas Cmyd_10007196 I 0.823
ENSCSAG00000002896 Chlorocebus sabaeus ENSCSAG00000002896 I 0.819
PRDM4 Choloepus hoffmanni ENSCHOG00000001744 I 0.817
PRDM4 Dasypus novemcinctus ENSDNOG00000032478 I 0.819
PRDM4 Equus caballus ENSECAG00000015423 I 0.819
PRDM4 Erinaceus europaeus ENSEEUG00000006569 I 0.777
PRDM4 Felis catus ENSFCAG00000022478 I 0.819
ENSFALG00000013342 Ficedula albicollis ENSFALG00000013342 I 0.825
PRDM4 Gallus gallus ENSGALG00000012619 I 0.825
Gfo_R004636 Geospiza fortis Gfo_R004636 I 0.825
PRDM4 Gorilla gorilla ENSGGOG00000001244 I 0.819
PRDM4 Homo sapiens ENSG00000110851 D 0.819
ENSSTOG00000016168 Ictidomys tridecemlineatus ENSSTOG00000016168 I 0.819
PRDM4 Loxodonta africana ENSLAFG00000001483 I 0.819
ENSP00000228437 Macaca fascicularis ENSP00000228437 I 0.819
PRDM4 Macaca mulatta ENSMMUG00000015550 I 0.819
ENSMEUG00000004495 Macropus eugenii ENSMEUG00000004495 I 0.825
PRDM4 Meleagris gallopavo ENSMGAG00000012815 I 0.825
PRDM4 Microcebus murinus ENSMICG00000007807 I 0.794
ENSMPUG00000012238 Mustela putorius furo ENSMPUG00000012238 I 0.819
Prdm4 Mus musculus ENSMUSG00000035529 I 0.819
Myotis_brandtii_PRDM4_10020406 Myotis brandtii Myotis_brandtii_PRDM4_10020406 I 0.819
PRDM4 Myotis lucifugus ENSMLUG00000000767 I 0.819
ENSNLEG00000006748 Nomascus leucogenys ENSNLEG00000006748 I 0.819
PRDM4 Ochotona princeps ENSOPRG00000010192 I 0.819
PRDM4 Ornithorhynchus anatinus ENSOANG00000005526 I 0.825
PRDM4 Otolemur garnettii ENSOGAG00000011945 I 0.819
ENSOARG00000017955 Ovis aries ENSOARG00000017955 I 0.819
PRDM4 Pan troglodytes ENSPTRG00000005400 I 0.819
ENSPANG00000022084 Papio anubis ENSPANG00000022084 I 0.819
ENSPSIG00000012066 Pelodiscus sinensis ENSPSIG00000012066 I 0.825
Pvit_09756 Pogona vitticeps Pvit_09756 I 0.823
ENSPPYG00000004913 Pongo abelii ENSPPYG00000004913 I 0.819
PRDM4 Procavia capensis ENSPCAG00000009987 I 0.819
Prdm4 Rattus norvegicus ENSRNOG00000004962 I 0.819
PRDM4 Sus scrofa ENSSSCG00000000160 I 0.819
ENSTGUG00000010962 Taeniopygia guttata ENSTGUG00000010962 I 0.825
ENSTGUG00000015149 Taeniopygia guttata ENSTGUG00000015149 I 0.825
PRDM4 Tursiops truncatus ENSTTRG00000011056 I 0.819
Tal_R009708 Tyto alba Tal_R009708 I 0.825
PRDM4 Vicugna pacos ENSVPAG00000002215 I 0.819