ENSOCUG00000024296 (Oryctolagus cuniculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOCUG00000024296 T103190_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.811 0.973
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.811 0.973
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.801 0.946
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.801 0.946
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.801 0.946
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000022012 C2H2 ZF 360 381
ENSOCUP00000022012 C2H2 ZF 387 409
ENSOCUP00000022293 C2H2 ZF 262 283
ENSOCUP00000022293 C2H2 ZF 289 311
ENSOCUP00000022293 C2H2 ZF 459 481
ENSOCUP00000022293 C2H2 ZF 487 509
ENSOCUP00000022293 C2H2 ZF 517 539

Links

Other C2H2 ZF family TFs
Other Oryctolagus cuniculus TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.000
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.000
HMGB13 Arabidopsis thaliana AT4G11080 D 0.000
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.000
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.000
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.000
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.000
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.000
Cla011101 Citrullus lanatus Cla011101 I 0.000
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.000
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.000
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.000
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.000
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.000
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.000
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.000
MDP0000268093 Malus domestica MDP0000268093 I 0.000
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.000
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.000
Pm024077 Prunus mume Pm024077 I 0.000
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.000
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.000
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.000