PRDM4 (Ochotona princeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOPRG00000010192 T104547_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 0.993
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 0.993
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 0.993
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000009308 C2H2 ZF 586 608
ENSOPRP00000009308 C2H2 ZF 614 636
ENSOPRP00000009308 C2H2 ZF 642 664
ENSOPRP00000009308 C2H2 ZF 670 692
ENSOPRP00000009308 C2H2 ZF 698 720
ENSOPRP00000009308 C2H2 ZF 726 747

Links

Other C2H2 ZF family TFs
Other Ochotona princeps TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GF14523 Drosophila ananassae FBgn0091550 I 0.000
GG24206 Drosophila erecta FBgn0116338 I 0.000
GH13116 Drosophila grimshawi FBgn0120593 I 0.000
GH22585 Drosophila grimshawi FBgn0130043 I 0.000
sna Drosophila melanogaster FBgn0003448 D 0.000
GL26593 Drosophila persimilis FBgn0164175 I 0.000
GA17803 Drosophila pseudoobscura FBgn0077812 I 0.000
GM14336 Drosophila sechellia FBgn0169261 I 0.000
GD21953 Drosophila simulans FBgn0193368 I 0.000
GJ23192 Drosophila virilis FBgn0210294 I 0.000
GK18251 Drosophila willistoni FBgn0220250 I 0.000
GE19401 Drosophila yakuba FBgn0236744 I 0.000
LCUP006861 Lucilia cuprina LCUP006861 I 0.000
MDOA012986 Musca domestica MDOA012986 I 0.000