ENSPFOG00000003460 (Poecilia formosa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPFOG00000003460 T106119_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.782 0.884
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.782 0.884
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.782 0.884
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.782 0.884
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.782 0.884
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.782 0.884
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.782 0.884
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.782 0.884
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.782 0.884
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.777 0.870
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.777 0.870
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.777 0.870
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.777 0.870
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.777 0.870
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.777 0.870
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.775 0.862
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.775 0.862
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.775 0.862
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.767 0.862
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPFOP00000003340 C2H2 ZF 167 190
ENSPFOP00000003340 C2H2 ZF 196 218
ENSPFOP00000003340 C2H2 ZF 224 246
ENSPFOP00000003340 C2H2 ZF 252 274
ENSPFOP00000003340 C2H2 ZF 280 302
ENSPFOP00000003340 C2H2 ZF 308 331
ENSPFOP00000025323 C2H2 ZF 168 191
ENSPFOP00000025323 C2H2 ZF 197 219
ENSPFOP00000025323 C2H2 ZF 225 247
ENSPFOP00000025323 C2H2 ZF 253 275
ENSPFOP00000025323 C2H2 ZF 281 303
ENSPFOP00000025323 C2H2 ZF 309 332
ENSPFOP00000030326 C2H2 ZF 161 184
ENSPFOP00000030326 C2H2 ZF 190 212

Links

Other C2H2 ZF family TFs
Other Poecilia formosa TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.782
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.780
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.776
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.780
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.780
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.776
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.780
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.774
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.767
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.780
GFI1B Bos taurus ENSBTAG00000012772 I 0.767
GFI1 Bos taurus ENSBTAG00000016723 I 0.784
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.755
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.780
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.782
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.777
Aan_R000889 Calypte anna Aan_R000889 I 0.780
Aan_R008865 Calypte anna Aan_R008865 I 0.776
GFI1B Canis familiaris ENSCAFG00000019877 I 0.777
GFI1 Canis familiaris ENSCAFG00000020155 I 0.782
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.782
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.777
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.782
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.779
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.775
gfi1aa Danio rerio ENSDARG00000020746 I 0.776
gfi1ab Danio rerio ENSDARG00000044457 I 0.784
gfi1b Danio rerio ENSDARG00000079947 I 0.798
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.782
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.777
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.775
GFI1 Equus caballus ENSECAG00000006647 I 0.784
GFI1B Equus caballus ENSECAG00000008127 I 0.775
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.782
GFI1 Felis catus ENSFCAG00000005914 I 0.782
GFI1B Felis catus ENSFCAG00000027147 I 0.779
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.776
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.780
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.767
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.802
GFI1B Gallus gallus ENSGALG00000003478 I 0.776
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.780
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.766
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.776
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.807
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.776
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.780
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.782
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.777
GFI1 Homo sapiens ENSG00000162676 D 0.782
GFI1B Homo sapiens ENSG00000165702 D 0.777
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.782
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.772
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.784
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.784
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.780
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.804
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.782
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.772
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.775
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.778
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.782
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.765
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.776
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.780
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.782
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.778
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.782
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.777
Gfi1b Mus musculus ENSMUSG00000026815 D 0.775
Gfi1 Mus musculus ENSMUSG00000029275 D 0.782
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.762
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.784
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.782
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.777
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.782
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.780
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.769
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.817
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.782
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.786
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.777
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.769
gfi1b Oryzias latipes ENSORLG00000014390 I 0.815
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.779
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.782
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.777
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.782
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.775
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.780
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.782
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.769
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.782
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.780
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.777
GFI1B Procavia capensis ENSPCAG00000012329 I 0.777
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.784
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.782
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.777
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.767
GFI1B Sus scrofa ENSSSCG00000005737 I 0.779
GFI1 Sus scrofa ENSSSCG00000006902 I 0.784
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.780
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.774
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.815
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.765
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.772
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.815
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.784
Tal_R001363 Tyto alba Tal_R001363 I 0.777
Tal_R006464 Tyto alba Tal_R006464 I 0.780
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.791
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.791
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.780
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.769
ENSXMAG00000018532 Xiphophorus maculatus ENSXMAG00000018532 N 0.827