CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM6
(
Pteropus vampyrus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSPVAG00000006781
T108588_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.827
1.000
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000006399
C2H2 ZF
475
496
WKCGQCFKTFTQRILLQMHVCT
ENSPVAP00000006399
C2H2 ZF
503
525
YQCGHCSQSFSQPSELRNHVVTH
ENSPVAP00000006399
C2H2 ZF
531
553
FKCGYCGRAFAGATTLNNHIRTH
ENSPVAP00000006399
C2H2 ZF
559
580
FKCERCERSFTQATQLSRHQRM
Links
Other
C2H2 ZF
family TFs
Other
Pteropus vampyrus
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000015711
Ailuropoda melanoleuca
ENSAMEG00000015711
I
0.827
Alligator_sinensis_CCG004791.1
Alligator sinensis
Alligator_sinensis_CCG004791.1
I
0.827
PRDM6
Anolis carolinensis
ENSACAG00000003401
I
0.827
ENSAMXG00000012588
Astyanax mexicanus
ENSAMXG00000012588
I
0.827
ENSBTAP00000027421-D1
Bos grunniens
ENSBTAP00000027421-D1
I
0.827
PRDM6
Bos taurus
ENSBTAG00000020578
I
0.827
PRDM6
Callithrix jacchus
ENSCJAG00000017318
I
0.827
PRDM6
Canis familiaris
ENSCAFG00000023666
I
0.827
ENSCPOG00000004258
Cavia porcellus
ENSCPOG00000004258
I
0.827
ENSCSAG00000014599
Chlorocebus sabaeus
ENSCSAG00000014599
I
0.827
PRDM6
Choloepus hoffmanni
ENSCHOG00000003085
I
0.827
PRDM6
Dasypus novemcinctus
ENSDNOG00000006337
I
0.827
PRDM6
Equus caballus
ENSECAG00000004532
I
0.827
PRDM6
Erinaceus europaeus
ENSEEUG00000005543
I
0.827
PRDM6
Felis catus
ENSFCAG00000026249
I
0.827
ENSFALG00000007522
Ficedula albicollis
ENSFALG00000007522
I
0.827
PRDM6
Gallus gallus
ENSGALG00000005351
I
0.827
PRDM6
Homo sapiens
ENSG00000061455
D
0.827
ENSLOCG00000008663
Lepisosteus oculatus
ENSLOCG00000008663
I
0.827
PRDM6
Loxodonta africana
ENSLAFG00000000396
I
0.827
ENSP00000261364
Macaca fascicularis
ENSP00000261364
I
0.827
ENSMMUG00000010652
Macaca mulatta
ENSMMUG00000010652
I
0.827
ENSMEUG00000011470
Macropus eugenii
ENSMEUG00000011470
I
0.827
ENSMICG00000007754
Microcebus murinus
ENSMICG00000007754
I
0.827
PRDM6
Monodelphis domestica
ENSMODG00000013415
I
0.827
ENSMPUG00000012965
Mustela putorius furo
ENSMPUG00000012965
I
0.827
Prdm6
Mus musculus
ENSMUSG00000069378
I
0.827
Myotis_brandtii_PRDM6_10015768
Myotis brandtii
Myotis_brandtii_PRDM6_10015768
I
0.827
PRDM6
Myotis lucifugus
ENSMLUG00000010064
I
0.827
ENSNLEG00000012064
Nomascus leucogenys
ENSNLEG00000012064
I
0.827
PRDM6
Ochotona princeps
ENSOPRG00000004020
I
0.827
Ogr18847
Ophisaurus gracilis
Ogr18847
I
0.827
ENSONIG00000013818
Oreochromis niloticus
ENSONIG00000013818
I
0.818
ENSOANG00000001527
Ornithorhynchus anatinus
ENSOANG00000001527
I
0.827
PRDM6
Oryctolagus cuniculus
ENSOCUG00000003454
I
0.827
ENSORLG00000017089
Oryzias latipes
ENSORLG00000017089
I
0.818
ENSOARG00000018873
Ovis aries
ENSOARG00000018873
I
0.827
PRDM6
Pan troglodytes
ENSPTRG00000017180
I
0.827
ENSPANG00000020936
Papio anubis
ENSPANG00000020936
I
0.827
ENSPSIG00000007714
Pelodiscus sinensis
ENSPSIG00000007714
I
0.827
ENSPFOG00000000918
Poecilia formosa
ENSPFOG00000000918
I
0.818
Pvit_11059
Pogona vitticeps
Pvit_11059
I
0.827
Prdm6
Rattus norvegicus
ENSRNOG00000030486
I
0.827
ENSSHAG00000009542
Sarcophilus harrisii
ENSSHAG00000009542
I
0.827
PRDM6
Sus scrofa
ENSSSCG00000014238
I
0.827
PRDM6
Takifugu rubripes
ENSTRUG00000011582
I
0.762
ENSTSYG00000009407
Tarsius syrichta
ENSTSYG00000009407
I
0.827
ENSTNIG00000004450
Tetraodon nigroviridis
ENSTNIG00000004450
I
0.762
PRDM6
Tupaia belangeri
ENSTBEG00000010088
I
0.827
PRDM6
Tursiops truncatus
ENSTTRG00000006808
I
0.827
prdm6
Xenopus tropicalis
XB-GENE-854907
I
0.827