snai1a (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000007311 T112009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.779 0.857
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.779 0.857
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.779 0.846
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.779 0.846
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.779 0.846
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.779 0.846
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.779 0.846
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.779 0.846
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.779 0.846
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.779 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001657 C2H2 ZF 153 175
ENSTNIP00000001657 C2H2 ZF 179 201
ENSTNIP00000001657 C2H2 ZF 207 229
ENSTNIP00000001657 C2H2 ZF 235 256
ENSTNIP00000010115 C2H2 ZF 148 170
ENSTNIP00000010115 C2H2 ZF 174 196
ENSTNIP00000010115 C2H2 ZF 202 224
ENSTNIP00000010115 C2H2 ZF 230 251

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_143213 Agaricus bisporus AGABI2DRAFT_143213 N
M378DRAFT_70504 Amanita muscaria M378DRAFT_70504 N
BOTBODRAFT_62341 Botryobasidium botryosum BOTBODRAFT_62341 N
CERSUDRAFT_118233 Ceriporiopsis subvermispora CERSUDRAFT_118233 N
DICSQDRAFT_163481 Dichomitus squalens DICSQDRAFT_163481 N
GALMADRAFT_46548 Galerina marginata GALMADRAFT_46548 N
GLOTRDRAFT_138787 Gloeophyllum trabeum GLOTRDRAFT_138787 N
M413DRAFT_73437 Hebeloma cylindrosporum M413DRAFT_73437 N
fgenesh2_pg.C_scaffold_14000115 Heterobasidion annosum fgenesh2_pg.C_scaffold_14000115 N
HETIRDRAFT_431082 Heterobasidion irregulare HETIRDRAFT_431082 N
JAAARDRAFT_196106 Jaapia argillacea JAAARDRAFT_196106 N
K443DRAFT_671746 Laccaria amethystina K443DRAFT_671746 N
LACBIDRAFT_296378 Laccaria bicolor LACBIDRAFT_296378 N
Moror_17790 Moniliophthora roreri Moror_17790 N
PAXINDRAFT_99404 Paxillus involutus PAXINDRAFT_99404 N
PAXRUDRAFT_827663 Paxillus rubicundulus PAXRUDRAFT_827663 N
PHACADRAFT_260024 Phanerochaete carnosa PHACADRAFT_260024 N
fgenesh1_pg.C_scaffold_4000408 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000408 N
PILCRDRAFT_820497 Piloderma croceum PILCRDRAFT_820497 N
PIIN_06096 Piriformospora indica PIIN_06096 N
PISMIDRAFT_102688 Pisolithus microcarpus PISMIDRAFT_102688 N
M404DRAFT_992132 Pisolithus tinctorius M404DRAFT_992132 N
PLEOSDRAFT_1112913 Pleurotus ostreatus PLEOSDRAFT_1112913 N
SCHCODRAFT_236086 Schizophyllum commune SCHCODRAFT_236086 N
SCLCIDRAFT_1213805 Scleroderma citrinum SCLCIDRAFT_1213805 N
M408DRAFT_64611 Serendipita vermifera M408DRAFT_64611 N
SERLA73DRAFT_159500 Serpula lacrymans SERLA73DRAFT_159500 N
CY34DRAFT_811362 Suillus luteus CY34DRAFT_811362 N
BN946_scf184985.g64 Trametes cinnabarina BN946_scf184985.g64 N