gfi1ab (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000000415 T112189_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.815 0.964
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.815 0.964
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.815 0.964
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.815 0.964
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.815 0.964
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.815 0.964
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.815 0.964
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.815 0.964
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.813 0.957
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.884
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.782 0.877
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.782 0.877
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.782 0.877
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.779 0.957
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.774 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000000979 C2H2 ZF 226 249
ENSTRUP00000000979 C2H2 ZF 255 277
ENSTRUP00000000979 C2H2 ZF 283 305
ENSTRUP00000000979 C2H2 ZF 311 333
ENSTRUP00000000979 C2H2 ZF 339 361
ENSTRUP00000000979 C2H2 ZF 367 390
ENSTRUP00000000980 C2H2 ZF 230 253
ENSTRUP00000000980 C2H2 ZF 259 281
ENSTRUP00000000980 C2H2 ZF 287 309
ENSTRUP00000000980 C2H2 ZF 315 337
ENSTRUP00000000980 C2H2 ZF 343 365
ENSTRUP00000000980 C2H2 ZF 371 394
ENSTRUP00000000981 C2H2 ZF 173 196
ENSTRUP00000000981 C2H2 ZF 202 224
ENSTRUP00000000981 C2H2 ZF 230 252
ENSTRUP00000000981 C2H2 ZF 258 280
ENSTRUP00000000981 C2H2 ZF 286 308
ENSTRUP00000000981 C2H2 ZF 314 337
ENSTRUP00000000982 C2H2 ZF 151 174
ENSTRUP00000000982 C2H2 ZF 180 202
ENSTRUP00000000982 C2H2 ZF 208 230
ENSTRUP00000000982 C2H2 ZF 236 258
ENSTRUP00000000982 C2H2 ZF 264 286
ENSTRUP00000000982 C2H2 ZF 292 315

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.815
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.815
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.788
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.815
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.817
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.788
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.815
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.822
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.771
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.806
GFI1B Bos taurus ENSBTAG00000012772 I 0.771
GFI1 Bos taurus ENSBTAG00000016723 I 0.817
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.793
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.815
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.815
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.784
Aan_R000889 Calypte anna Aan_R000889 I 0.815
Aan_R008865 Calypte anna Aan_R008865 I 0.788
GFI1B Canis familiaris ENSCAFG00000019877 I 0.781
GFI1 Canis familiaris ENSCAFG00000020155 I 0.815
CapteG45287 Capitella teleta CapteG45287 I 0.762
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.812
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.782
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.810
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.789
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.782
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.785
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.767
gfi1aa Danio rerio ENSDARG00000020746 I 0.809
gfi1ab Danio rerio ENSDARG00000044457 I 0.816
gfi1b Danio rerio ENSDARG00000079947 I 0.774
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.815
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.781
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.782
GF15430 Drosophila ananassae FBgn0092455 I 0.774
GG10437 Drosophila erecta FBgn0102746 I 0.774
GH13715 Drosophila grimshawi FBgn0121191 I 0.774
sens-2 Drosophila melanogaster FBgn0051632 D 0.774
GI23984 Drosophila mojavensis FBgn0146708 I 0.774
GL26188 Drosophila persimilis FBgn0163770 I 0.774
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.774
GM16223 Drosophila sechellia FBgn0171139 I 0.774
GJ21268 Drosophila virilis FBgn0208401 I 0.774
GK24242 Drosophila willistoni FBgn0226203 I 0.774
GE14143 Drosophila yakuba FBgn0231766 I 0.774
GFI1 Equus caballus ENSECAG00000006647 I 0.817
GFI1B Equus caballus ENSECAG00000008127 I 0.781
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.815
GFI1 Felis catus ENSFCAG00000005914 I 0.815
GFI1B Felis catus ENSFCAG00000027147 I 0.783
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.788
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.815
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.785
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.772
GFI1B Gallus gallus ENSGALG00000003478 I 0.788
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.815
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.808
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.800
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.776
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.788
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.815
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.815
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.784
GFI1 Homo sapiens ENSG00000162676 D 0.815
GFI1B Homo sapiens ENSG00000165702 D 0.784
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.815
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.785
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.785
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.817
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.817
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.774
LotgiG129344 Lottia gigantea LotgiG129344 I 0.779
LotgiG83709 Lottia gigantea LotgiG83709 I 0.769
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.815
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.777
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.782
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.804
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.815
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.772
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.788
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.815
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.815
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.786
MDOA011065 Musca domestica MDOA011065 I 0.774
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.815
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.781
Gfi1b Mus musculus ENSMUSG00000026815 D 0.782
Gfi1 Mus musculus ENSMUSG00000029275 D 0.815
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.764
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.769
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.817
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.815
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.784
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.815
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.817
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.793
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.766
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.819
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.776
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.784
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.793
gfi1b Oryzias latipes ENSORLG00000014390 I 0.764
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.783
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.815
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.784
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.815
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.782
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.812
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.786
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.774
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.793
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.817
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.814
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.784
GFI1B Procavia capensis ENSPCAG00000012329 I 0.783
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.817
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.815
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.784
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.760
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.771
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.780
GFI1B Sus scrofa ENSSSCG00000005737 I 0.783
GFI1 Sus scrofa ENSSSCG00000006902 I 0.817
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.815
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.764
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.793
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.783
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.823
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.764
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.817
Tal_R001363 Tyto alba Tal_R001363 I 0.788
Tal_R006464 Tyto alba Tal_R006464 I 0.815
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.770
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.770
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.815
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.793