CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OLONG_027628 *(Oryza longistaminata)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	OLONG_027628	T124866_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AZF1 M01860_2.00	Arabidopsis thaliana	NWSYDNN	NNHRSWN	PBM Weirauch et al.(2014) pTH7163	0.762	0.783
AZF1 M06826_2.00	Arabidopsis thaliana	WCACTVWCWNH	DNWGWBAGTGW	Dap-seq OMalley et al.(2016) AZF1_colamp_a	0.762	0.783
ZAT10 M01852_2.00	Arabidopsis thaliana	NNHASWN	NWSTDNN	PBM Weirauch et al.(2014) pTH7255	0.762	0.739
ZAT10 M06799_2.00	Arabidopsis thaliana	WSHHCACT	AGTGDDSW	Dap-seq OMalley et al.(2016) STZ_colamp_a	0.762	0.739
ZAT10 M06800_2.00	Arabidopsis thaliana	YWSHNHCASTN	NASTGDNDSWR	Dap-seq OMalley et al.(2016) STZ_col	0.762	0.739
ZAT6 M00861_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Franco-Zorrilla et al.(2014) ZAT6	0.758	0.783
AZF2 M01854_2.00	Arabidopsis thaliana	NASTRNN	NNYASTN	PBM Weirauch et al.(2014) pTH8258	0.758	0.739
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Oryza longistaminata* TFs

145 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g04870	Acanthocheilonema viteae	nAv.1.0.1.g04870	N	0.000
ASIM_0001284101	Anisakis simplex	ASIM_0001284101	N	0.000
ASU_05009	Ascaris suum	ASU_05009	N	0.000
Bm10163	Brugia malayi	Bm10163	N	0.000
Bm7640	Brugia malayi	Bm7640	N	0.000
BXY_0855500	Bursaphelenchus xylophilus	BXY_0855500	N	0.000
CBG08165	Caenorhabditis briggsae	CBG08165	N	0.000
CRE17146	Caenorhabditis remanei	CRE17146	N	0.000
nDi.2.2.2.g01589	Dirofilaria immitis	nDi.2.2.2.g01589	N	0.000
EEL_0000412901	Elaeophora elaphi	EEL_0000412901	N	0.000
EVEC_0001166801	Enterobius vermicularis	EVEC_0001166801	N	0.000
HPBE_0001810001	Heligmosomoides bakeri	HPBE_0001810001	N	0.000
Hba_21527	Heterorhabditis bacteriophora	Hba_21527	N	0.000
LOAG_03092	Loa loa	LOAG_03092	N	0.000
nOo.2.0.1.g00722	Onchocerca ochengi	nOo.2.0.1.g00722	N	0.000
WBGene00239750	Onchocerca volvulus	WBGene00239750	N	0.000
RSKR_0001108600	Rhabditophanes kr3021	RSKR_0001108600	N	0.000
L596_g9224	Steinernema carpocapsae	L596_g9224	N	0.000
L889_g25145	Steinernema feltiae	L889_g25145	N	0.000
L898_g34810	Steinernema monticolum	L898_g34810	N	0.000
L892_g9710	Steinernema scapterisci	L892_g9710	N	0.000
SPAL_0000744000	Strongyloides papillosus	SPAL_0000744000	N	0.000
SSTP_0001191000	Strongyloides stercoralis	SSTP_0001191000	N	0.000
SVE_1021200	Strongyloides venezuelensis	SVE_1021200	N	0.000
TCLT_0000625901	Thelazia callipaeda	TCLT_0000625901	N	0.000
TCNE_0001573901	Toxocara canis	TCNE_0001573901	N	0.000
WUBG_04888	Wuchereria bancrofti	WUBG_04888	N	0.000