OS03G0279700 (Oryza sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OS03G0279700 T125215_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.786 0.795
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.786 0.795
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.776 0.773
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.772 0.818
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.772 0.818
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.773
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.818
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS03T0279700-01 C2H2 ZF 51 73
OS03T0279700-01 C2H2 ZF 96 116

Links

Other C2H2 ZF family TFs
Other Oryza sativa TFs

372 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgeneshCV_pg.C_scaffold_4000372 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000372 I
Genemark1.2462_g Coccomyxa subellipsoidea C169 Genemark1.2462_g I
EuGene.0000020579 Micromonas pusilla EuGene.0000020579 I
AZW_PierreAnnot2.00051 Micromonas sp RCC299 AZW_PierreAnnot2.00051 I
OSTLU_30413 Ostreococcus lucimarinus OSTLU_30413 I
fgenesh1_pm.chr_3_#_182 Ostreococcus RCC809 fgenesh1_pm.chr_3_#_182 I
estExt_fgenesh1_pg.C_Chr_03.00010061 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_03.00010061 D
estExt_fgenesh1_pg.C_1650042 Physcomitrella patens estExt_fgenesh1_pg.C_1650042 I
estExt_fgenesh1_pg.C_430108 Physcomitrella patens estExt_fgenesh1_pg.C_430108 I
SELMODRAFT_432103 Selaginella moellendorffii SELMODRAFT_432103 I
SELMODRAFT_59730 Selaginella moellendorffii SELMODRAFT_59730 N
SELMODRAFT_69727 Selaginella moellendorffii SELMODRAFT_69727 N