scaffold_503291.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_503291.1 T128314_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.827 1.000
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.827 0.935
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.802 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.717
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.717
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.717
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.739
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_503291.1 C2H2 ZF 184 206
scaffold_503291.1 C2H2 ZF 235 257

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000278 Ailuropoda melanoleuca ENSAMEG00000000278 I 0.000
Alligator_sinensis_CCG010998.1 Alligator sinensis Alligator_sinensis_CCG010998.1 N 0.000
ENSAPLG00000002882 Anas platyrhynchos ENSAPLG00000002882 I 0.000
GRHL3 Anolis carolinensis ENSACAG00000017262 N 0.000
Afo_R008962 Aptenodytes forsteri Afo_R008962 N 0.000
Afo_R015753 Aptenodytes forsteri Afo_R015753 I 0.000
ENSAMXG00000000221 Astyanax mexicanus ENSAMXG00000000221 I 0.000
ENSBTAP00000026370-D1 Bos grunniens ENSBTAP00000026370-D1 N 0.000
ENSP00000251808-D1 Bos grunniens ENSP00000251808-D1 I 0.000
ENSP00000384209-D1 Bos grunniens ENSP00000384209-D1 I 0.000
GRHL2 Bos taurus ENSBTAG00000004518 I 0.000
GRHL1 Bos taurus ENSBTAG00000007485 I 0.000
GRHL3 Bos taurus ENSBTAG00000019791 N 0.000
Brh_R003016 Buceros rhinoceros Brh_R003016 I 0.000
Brh_R012570 Buceros rhinoceros Brh_R012570 N 0.000
GRHL1 Callithrix jacchus ENSCJAG00000006431 I 0.000
GRHL2 Callithrix jacchus ENSCJAG00000015886 I 0.000
Aan_R015393 Calypte anna Aan_R015393 I 0.000
Cmyd_10003336 Chelonia mydas Cmyd_10003336 I 0.000
ENSCSAG00000011989 Chlorocebus sabaeus ENSCSAG00000011989 I 0.000
ENSCSAG00000007158 Chlorocebus sabaeus ENSCSAG00000007158 I 0.000
ENSCING00000007574 Ciona intestinalis ENSCING00000007574 N 0.000
ENSCSAVG00000010949 Ciona savignyi ENSCSAVG00000010949 N 0.000
grhl2a Danio rerio ENSDARG00000058342 I 0.000
grhl1 Danio rerio ENSDARG00000061391 I 0.000
GRHL1 Dasypus novemcinctus ENSDNOG00000014493 I 0.000
GRHL2 Dasypus novemcinctus ENSDNOG00000048641 I 0.000
ENSFALG00000006639 Ficedula albicollis ENSFALG00000006639 I 0.000
ENSGALG00000014208 Gallus gallus ENSGALG00000014208 I 0.000
ENSGALG00000016439 Gallus gallus ENSGALG00000016439 I 0.000
grhl1 Gasterosteus aculeatus ENSGACG00000008845 I 0.000
grhl2a Gasterosteus aculeatus ENSGACG00000003655 I 0.000
Gfo_R015266 Geospiza fortis Gfo_R015266 I 0.000
GRHL1 Gorilla gorilla ENSGGOG00000002692 I 0.000
GRHL1 Homo sapiens ENSG00000134317 D 0.000
GRHL2 Homo sapiens ENSG00000083307 D 0.000
ENSSTOG00000019842 Ictidomys tridecemlineatus ENSSTOG00000019842 I 0.000
ENSSTOG00000023529 Ictidomys tridecemlineatus ENSSTOG00000023529 N 0.000
ENSLACG00000006172 Latimeria chalumnae ENSLACG00000006172 I 0.000
ENSLACG00000015480 Latimeria chalumnae ENSLACG00000015480 N 0.000
ENSLOCG00000016835 Lepisosteus oculatus ENSLOCG00000016835 I 0.000
GRHL3 Loxodonta africana ENSLAFG00000001618 N 0.000
GRHL1 Loxodonta africana ENSLAFG00000009330 I 0.000
GRHL2 Loxodonta africana ENSLAFG00000010356 I 0.000
ENSMMUP00000002046 Macaca fascicularis ENSMMUP00000002046 I 0.000
GRHL1 Macaca mulatta ENSMMUG00000001535 I 0.000
GRHL1 Meleagris gallopavo ENSMGAG00000014007 I 0.000
GRHL2 Meleagris gallopavo ENSMGAG00000012259 I 0.000
GRHL2 Microcebus murinus ENSMICG00000014771 I 0.000
GRHL1 Monodelphis domestica ENSMODG00000014753 I 0.000
ENSMPUG00000015153 Mustela putorius furo ENSMPUG00000015153 I 0.000
Myotis_brandtii_GRHL2_10032153 Myotis brandtii Myotis_brandtii_GRHL2_10032153 I 0.000
Myotis_brandtii_GRHL1_10020834 Myotis brandtii Myotis_brandtii_GRHL1_10020834 I 0.000
GRHL2 Myotis lucifugus ENSMLUG00000010961 I 0.000
GRHL1 Myotis lucifugus ENSMLUG00000002290 I 0.000
ENSNLEG00000003271 Nomascus leucogenys ENSNLEG00000003271 I 0.000
ENSNLEG00000013634 Nomascus leucogenys ENSNLEG00000013634 I 0.000
SNAPOd2T00018760001 Oikopleura dioica SNAPOd2T00018760001 N 0.000
Ogr04284 Ophisaurus gracilis Ogr04284 I 0.000
ENSONIG00000003707 Oreochromis niloticus ENSONIG00000003707 I 0.000
ENSONIG00000002710 Oreochromis niloticus ENSONIG00000002710 I 0.000
GRHL1 Ornithorhynchus anatinus ENSOANG00000007788 I 0.000
GRHL2 Ornithorhynchus anatinus ENSOANG00000004305 I 0.000
GRHL1 Oryctolagus cuniculus ENSOCUG00000017717 I 0.000
grhl1 Oryzias latipes ENSORLG00000015232 I 0.000
grhl2a Oryzias latipes ENSORLG00000002613 N 0.000
GRHL1 Otolemur garnettii ENSOGAG00000014342 I 0.000
GRHL2 Otolemur garnettii ENSOGAG00000004751 I 0.000
ENSOARG00000006636 Ovis aries ENSOARG00000006636 N 0.000
ENSOARG00000018325 Ovis aries ENSOARG00000018325 I 0.000
GRHL2 Pan troglodytes ENSPTRG00000020479 I 0.000
ENSPANG00000017807 Papio anubis ENSPANG00000017807 I 0.000
ENSPSIG00000010930 Pelodiscus sinensis ENSPSIG00000010930 I 0.000
ENSPSIG00000003669 Pelodiscus sinensis ENSPSIG00000003669 I 0.000
ENSPFOG00000010589 Poecilia formosa ENSPFOG00000010589 N 0.000
ENSPFOG00000006095 Poecilia formosa ENSPFOG00000006095 I 0.000
Pvit_03833 Pogona vitticeps Pvit_03833 I 0.000
GRHL1 Pteropus vampyrus ENSPVAG00000002002 I 0.000
Grhl1 Rattus norvegicus ENSRNOG00000054989 I 0.000
ENSSHAG00000015849 Sarcophilus harrisii ENSSHAG00000015849 I 0.000
ENSSHAG00000002291 Sarcophilus harrisii ENSSHAG00000002291 I 0.000
GRHL1 Taeniopygia guttata ENSTGUG00000013038 I 0.000
ENSTGUG00000012086 Taeniopygia guttata ENSTGUG00000012086 I 0.000
GRHL3 Taeniopygia guttata ENSTGUG00000001153 N 0.000
grhl2a Takifugu rubripes ENSTRUG00000011936 N 0.000
grhl1 Takifugu rubripes ENSTRUG00000013628 I 0.000
grhl2b Takifugu rubripes ENSTRUG00000002119 I 0.000
GRHL2 Tursiops truncatus ENSTTRG00000005794 I 0.000
Tal_R005479 Tyto alba Tal_R005479 N 0.000
Tal_R012680 Tyto alba Tal_R012680 I 0.000
grhl1.L Xenopus laevis XB-GENE-486580 I 0.000
grhl2 Xenopus tropicalis XB-GENE-485995 I 0.000
XP_002938936 Xenopus tropicalis XP_002938936 I 0.000
ENSXMAG00000013267 Xiphophorus maculatus ENSXMAG00000013267 I 0.000