scaffold_700556.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_700556.1 T128318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT4G35610
M00859_2.00 		Arabidopsis thaliana
NNBHAGCTDNN
NNHAGCTDVNN		 PBM
Franco-Zorrilla et al.(2014)
At4g35610 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_700556.1 C2H2 ZF 137 158

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASU_03287 Ascaris suum ASU_03287 N
CBN19242 Caenorhabditis brenneri CBN19242 I
CBG21552 Caenorhabditis briggsae CBG21552 I
dmd-6 Caenorhabditis elegans WBGene00007058 D
CJA02063 Caenorhabditis japonica CJA02063 I
CRE11598 Caenorhabditis remanei CRE11598 I
CRE21432 Caenorhabditis remanei CRE21432 I
Hba_17510 Heterorhabditis bacteriophora Hba_17510 I
L596_g15761 Steinernema carpocapsae L596_g15761 I
L889_g31904 Steinernema feltiae L889_g31904 I
L898_g22776 Steinernema monticolum L898_g22776 I
L892_g15289 Steinernema scapterisci L892_g15289 I
SMUV_0000230101 Syphacia muris SMUV_0000230101 N
TELCIR_10880 Teladorsagia circumcincta TELCIR_10880 I
TCNE_0001712701 Toxocara canis TCNE_0001712701 I