scaffold_700556.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_700556.1 T128318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT4G35610
M00859_2.00 		Arabidopsis thaliana
NNBHAGCTDNN
NNHAGCTDVNN		 PBM
Franco-Zorrilla et al.(2014)
At4g35610 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_700556.1 C2H2 ZF 137 158

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT4G35610 Arabidopsis thaliana AT4G35610 D 0.827
Cagra.2350s0104 Capsella grandiflora Cagra.2350s0104 I 0.827
Carubv10007498m.g Capsella rubella Carubv10007498m.g I 0.827
Thhalv10026068m.g Eutrema salsugineum Thhalv10026068m.g I 0.769
POPTR_0005s10330 Populus trichocarpa POPTR_0005s10330 I 0.757
POPTR_0007s08920 Populus trichocarpa POPTR_0007s08920 I 0.757
SapurV1A.0085s0140 Salix purpurea SapurV1A.0085s0140 I 0.757