sptf-3 (Caenorhabditis elegans)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 WBGene00012735 T131606_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sptf-3
M00632_2.00		 Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN		 PBM
Narasimhan et al.(2015)
pTH9394		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp1
M00765_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2013)
pTH0978 		0.766 0.754
SP1
M02921_2.00 		Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY		 SELEX
Jolma et al.(2013)
SP1_1 		0.766 0.754
SP1
M04605_2.00 		Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX 		0.766 0.754
SP1
M08096_2.00 		Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0079.3 		0.766 0.754
SP1
M08363_2.00 		Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG		 ChIP-seq
Schmitges et al.(2016)
P08047.MEME 		0.766 0.754
SP1
M08938_2.00 		Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV		 Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A 		0.766 0.754
Sp1
M08963_2.00 		Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG		 Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A 		0.766 0.754
SP1
M10294_2.00 		Homo sapiens
DSCMHGCCYH
DRGGCDKGSH		 Transfac
Matys et al.(2006)
V$SP1_01 		0.766 0.754
SP1
M10295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_02 		0.766 0.754
SP1
M10296_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_07 		0.766 0.754
SP1
M10297_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_08 		0.766 0.754
SP1
M10298_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q2_02 		0.766 0.754
SP1
M10299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q3 		0.766 0.754
SP1
M10300_2.00 		Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB		 Transfac
Matys et al.(2006)
V$SP1_Q6 		0.766 0.754
SP1
M04606_2.00 		Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX 		0.766 0.754
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00632_2.00 C2H2 ZF 51 73
M00632_2.00 C2H2 ZF 79 103
M00632_2.00 C2H2 ZF 109 131

DNA Binding Domains

Protein ID Domain From To Sequence
Y40B1A.4 C2H2 ZF 316 338
Y40B1A.4 C2H2 ZF 344 368
Y40B1A.4 C2H2 ZF 374 396

Links

Other C2H2 ZF family TFs
Other Caenorhabditis elegans TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013103 Ailuropoda melanoleuca ENSAMEG00000013103 I
ENSAMEG00000017117 Ailuropoda melanoleuca ENSAMEG00000017117 I
Alligator_sinensis_CCG002397.1 Alligator sinensis Alligator_sinensis_CCG002397.1 I
Alligator_sinensis_CCG004214.1 Alligator sinensis Alligator_sinensis_CCG004214.1 I
Alligator_sinensis_CCG020422.1 Alligator sinensis Alligator_sinensis_CCG020422.1 I
ENSAPLG00000010269 Anas platyrhynchos ENSAPLG00000010269 I
ENSAPLG00000011965 Anas platyrhynchos ENSAPLG00000011965 I
TFEB Anolis carolinensis ENSACAG00000002664 I
MITF Anolis carolinensis ENSACAG00000013586 I
TFE3 Anolis carolinensis ENSACAG00000022140 I
Afo_R002063 Aptenodytes forsteri Afo_R002063 I
Afo_R011673 Aptenodytes forsteri Afo_R011673 I
ENSAMXG00000007343 Astyanax mexicanus ENSAMXG00000007343 I
ENSBTAP00000053693-D1 Bos grunniens ENSBTAP00000053693-D1 I
MITF Bos taurus ENSBTAG00000006679 I
TFEB Bos taurus ENSBTAG00000012384 I
Brh_R005039 Buceros rhinoceros Brh_R005039 I
Brh_R009446 Buceros rhinoceros Brh_R009446 I
TFEB Callithrix jacchus ENSCJAG00000004199 I
MITF Callithrix jacchus ENSCJAG00000013260 I
Aan_R003797 Calypte anna Aan_R003797 I
Aan_R007225 Calypte anna Aan_R007225 I
TFEB Canis familiaris ENSCAFG00000001599 I
MITF Canis familiaris ENSCAFG00000006496 I
TFEB Cavia porcellus ENSCPOG00000008027 I
TFE3 Cavia porcellus ENSCPOG00000012410 I
MITF Cavia porcellus ENSCPOG00000014963 I
Cmyd_10010632 Chelonia mydas Cmyd_10010632 I
ENSCSAG00000011274 Chlorocebus sabaeus ENSCSAG00000011274 I
ENSCSAG00000011595 Chlorocebus sabaeus ENSCSAG00000011595 I
mitfa Danio rerio ENSDARG00000003732 I
tfeb Danio rerio ENSDARG00000010794 I
mitfb Danio rerio ENSDARG00000037833 I
MITF Dasypus novemcinctus ENSDNOG00000037006 I
Mitf Dipodomys ordii ENSDORG00000003336 I
ENSDORG00000013258 Dipodomys ordii ENSDORG00000013258 I
MITF Equus caballus ENSECAG00000005360 I
TFEB Equus caballus ENSECAG00000019762 I
MITF Erinaceus europaeus ENSEEUG00000005163 I
TFEB Felis catus ENSFCAG00000011521 I
MITF Felis catus ENSFCAG00000024419 I
ENSFALG00000003097 Ficedula albicollis ENSFALG00000003097 I
ENSFALG00000013383 Ficedula albicollis ENSFALG00000013383 I
ENSGMOG00000007421 Gadus morhua ENSGMOG00000007421 I
ENSGMOG00000010175 Gadus morhua ENSGMOG00000010175 I
ENSGALG00000003404 Gallus gallus ENSGALG00000003404 I
ENSGALG00000007679 Gallus gallus ENSGALG00000007679 I
mitfb Gasterosteus aculeatus ENSGACG00000003425 I
tfe3b Gasterosteus aculeatus ENSGACG00000010355 I
mitfa Gasterosteus aculeatus ENSGACG00000011875 I
Gfo_R002984 Geospiza fortis Gfo_R002984 I
Gfo_R014572 Geospiza fortis Gfo_R014572 I
TFEB Gorilla gorilla ENSGGOG00000002683 I
MITF Gorilla gorilla ENSGGOG00000024338 I
TFEB Homo sapiens ENSG00000112561 D
MITF Homo sapiens ENSG00000187098 D
ENSSTOG00000014237 Ictidomys tridecemlineatus ENSSTOG00000014237 I
ENSSTOG00000015338 Ictidomys tridecemlineatus ENSSTOG00000015338 I
ENSLACG00000011547 Latimeria chalumnae ENSLACG00000011547 I
ENSLACG00000013218 Latimeria chalumnae ENSLACG00000013218 I
ENSLOCG00000010058 Lepisosteus oculatus ENSLOCG00000010058 I
ENSLOCG00000012145 Lepisosteus oculatus ENSLOCG00000012145 I
TFEB Loxodonta africana ENSLAFG00000003059 I
MITF Loxodonta africana ENSLAFG00000023153 I
ENSP00000343948 Macaca fascicularis ENSP00000343948 I
ENSP00000391803 Macaca fascicularis ENSP00000391803 I
MITF Macaca mulatta ENSMMUG00000002100 I
TFEB Macaca mulatta ENSMMUG00000004690 I
TFEB Meleagris gallopavo ENSMGAG00000006159 I
MITF Meleagris gallopavo ENSMGAG00000009507 I
ENSMICG00000002894 Microcebus murinus ENSMICG00000002894 I
TFEB Microcebus murinus ENSMICG00000015674 I
MITF Monodelphis domestica ENSMODG00000003754 I
TFE3 Monodelphis domestica ENSMODG00000009925 I
TFEB Monodelphis domestica ENSMODG00000012916 I
ENSMPUG00000013594 Mustela putorius furo ENSMPUG00000013594 I
ENSMPUG00000016972 Mustela putorius furo ENSMPUG00000016972 I
Tfe3 Mus musculus ENSMUSG00000000134 D
Tfeb Mus musculus ENSMUSG00000023990 D
Mitf Mus musculus ENSMUSG00000035158 D
Myotis_brandtii_Mitf_10022588 Myotis brandtii Myotis_brandtii_Mitf_10022588 I
Myotis_brandtii_TFEB_10015405 Myotis brandtii Myotis_brandtii_TFEB_10015405 I
TFEB Myotis lucifugus ENSMLUG00000000232 I
MITF Myotis lucifugus ENSMLUG00000002587 I
ENSNLEG00000002357 Nomascus leucogenys ENSNLEG00000002357 I
ENSNLEG00000004906 Nomascus leucogenys ENSNLEG00000004906 I
Ogr06907 Ophisaurus gracilis Ogr06907 I
ENSONIG00000016952 Oreochromis niloticus ENSONIG00000016952 I
ENSONIG00000019306 Oreochromis niloticus ENSONIG00000019306 I
ENSONIG00000020270 Oreochromis niloticus ENSONIG00000020270 I
ENSOANG00000012406 Ornithorhynchus anatinus ENSOANG00000012406 I
TFE3 Ornithorhynchus anatinus ENSOANG00000013574 I
TFEB Ornithorhynchus anatinus ENSOANG00000015438 I
MITF Oryctolagus cuniculus ENSOCUG00000002190 I
TFEB Oryctolagus cuniculus ENSOCUG00000027474 I
mitfa Oryzias latipes ENSORLG00000003123 I
mitfb Oryzias latipes ENSORLG00000013461 I
tfeb Oryzias latipes ENSORLG00000015866 I
MITF Otolemur garnettii ENSOGAG00000000043 I
TFEB Otolemur garnettii ENSOGAG00000010116 I
ENSOARG00000002322 Ovis aries ENSOARG00000002322 I
ENSOARG00000009833 Ovis aries ENSOARG00000009833 I
MITF Pan troglodytes ENSPTRG00000015100 I
TFEB Pan troglodytes ENSPTRG00000018157 I
ENSPANG00000009713 Papio anubis ENSPANG00000009713 I
ENSPANG00000011565 Papio anubis ENSPANG00000011565 I
ENSPSIG00000010995 Pelodiscus sinensis ENSPSIG00000010995 I
ENSPSIG00000012120 Pelodiscus sinensis ENSPSIG00000012120 I
ENSPMAG00000001002 Petromyzon marinus ENSPMAG00000001002 I
ENSPMAG00000004927 Petromyzon marinus ENSPMAG00000004927 I
ENSPFOG00000006677 Poecilia formosa ENSPFOG00000006677 I
ENSPFOG00000007171 Poecilia formosa ENSPFOG00000007171 I
ENSPFOG00000017022 Poecilia formosa ENSPFOG00000017022 I
Pvit_00330 Pogona vitticeps Pvit_00330 I
Pvit_01233 Pogona vitticeps Pvit_01233 I
Pvit_06044 Pogona vitticeps Pvit_06044 I
ENSPPYG00000013725 Pongo abelii ENSPPYG00000013725 I
ENSPPYG00000016599 Pongo abelii ENSPPYG00000016599 I
TFEB Pteropus vampyrus ENSPVAG00000007581 I
Mitf Rattus norvegicus ENSRNOG00000008658 I
Tfe3 Rattus norvegicus ENSRNOG00000009605 I
Tfeb Rattus norvegicus ENSRNOG00000014666 I
ENSSHAG00000009705 Sarcophilus harrisii ENSSHAG00000009705 I
ENSSHAG00000017522 Sarcophilus harrisii ENSSHAG00000017522 I
MITF Sorex araneus ENSSARG00000002538 I
TFEB Sus scrofa ENSSSCG00000001621 I
MITF Taeniopygia guttata ENSTGUG00000009847 I
ENSTGUG00000017433 Taeniopygia guttata ENSTGUG00000017433 I
tfeb Takifugu rubripes ENSTRUG00000000653 I
mitfa Takifugu rubripes ENSTRUG00000001600 I
mitfb Takifugu rubripes ENSTRUG00000012080 I
ENSTSYG00000011324 Tarsius syrichta ENSTSYG00000011324 I
tfeb Tetraodon nigroviridis ENSTNIG00000007281 I
mitfa Tetraodon nigroviridis ENSTNIG00000007360 I
mitfb Tetraodon nigroviridis ENSTNIG00000012564 I
MITF Tupaia belangeri ENSTBEG00000017713 I
MITF Tursiops truncatus ENSTTRG00000007072 I
ENSTTRG00000016385 Tursiops truncatus ENSTTRG00000016385 I
Tal_R001329 Tyto alba Tal_R001329 I
Tal_R006591 Tyto alba Tal_R006591 I
mitf.L Xenopus laevis XB-GENE-6252679 I
mitf.S Xenopus laevis XB-GENE-6464338 I
mitf Xenopus tropicalis XB-GENE-484962 I
ENSXMAG00000002200 Xiphophorus maculatus ENSXMAG00000002200 I
ENSXMAG00000003856 Xiphophorus maculatus ENSXMAG00000003856 I
ENSXMAG00000016472 Xiphophorus maculatus ENSXMAG00000016472 I