Afo_R010236 (Aptenodytes forsteri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Afo_R010236 T132869_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.827 0.993
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.827 0.993
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.827 0.993
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.827 0.993
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.827 0.993
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.827 0.993
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.827 0.993
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.827 0.993
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.827 0.993
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.827 0.993
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.827 0.993
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.827 0.993
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.827 0.993
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.827 0.993
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.827 0.993
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.821 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R010236 C2H2 ZF 521 544
Afo_R010236 C2H2 ZF 549 571
Afo_R010236 C2H2 ZF 577 599
Afo_R010236 C2H2 ZF 605 627
Afo_R010236 C2H2 ZF 633 655
Afo_R010236 C2H2 ZF 661 684

Links

Other C2H2 ZF family TFs
Other Aptenodytes forsteri TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G12615 Brachypodium distachyon BRADI4G12615 N
Ca_05643 Cicer arietinum Ca_05643 N
gene12191-v1.0-hybrid Fragaria vesca gene12191-v1.0-hybrid N
LPERR03G29580 Leersia perrieri LPERR03G29580 N
chr5.CM0200.500.nc Lotus japonicus chr5.CM0200.500.nc N
chr5.CM0200.490.nc Lotus japonicus chr5.CM0200.490.nc N
MDP0000876738 Malus domestica MDP0000876738 N
MTR_1g106470 Medicago truncatula MTR_1g106470 N
OBART11G20580 Oryza barthii OBART11G20580 N
OB11G25500 Oryza brachyantha OB11G25500 N
ORGLA11G0169400 Oryza glaberrima ORGLA11G0169400 N
ORGLA10G0168100 Oryza glaberrima ORGLA10G0168100 N
ORGLA03G0322200 Oryza glaberrima ORGLA03G0322200 N
OGLUM03G34950 Oryza glumaepatula OGLUM03G34950 N
OGLUM11G20000 Oryza glumaepatula OGLUM11G20000 N
BGIOSGA013618 Oryza indica BGIOSGA013618 N
BGIOSGA035596 Oryza indica BGIOSGA035596 N
OLONG_003723 Oryza longistaminata OLONG_003723 N
OLONG_021754 Oryza longistaminata OLONG_021754 N
OMERI03G32400 Oryza meridionalis OMERI03G32400 N
ONIVA11G20620 Oryza nivara ONIVA11G20620 N
ONIVA03G36690 Oryza nivara ONIVA03G36690 N
OPUNC11G17200 Oryza punctata OPUNC11G17200 N
OPUNC03G32220 Oryza punctata OPUNC03G32220 N
ORUFI03G36640 Oryza rufipogon ORUFI03G36640 N
ORUFI11G22390 Oryza rufipogon ORUFI11G22390 N
OS11G0634700 Oryza sativa OS11G0634700 N
Pavir.Ca02388 Panicum virgatum Pavir.Ca02388 N
Pavir.Ca02532 Panicum virgatum Pavir.Ca02532 N
Pavir.Cb00430 Panicum virgatum Pavir.Cb00430 N
Pavir.Ha00126 Panicum virgatum Pavir.Ha00126 N
Pavir.Hb00249 Panicum virgatum Pavir.Hb00249 N
Pavir.Ia01481 Panicum virgatum Pavir.Ia01481 N
Pavir.Ib03951 Panicum virgatum Pavir.Ib03951 N
Pm021173 Prunus mume Pm021173 N
PRUPE_ppa015724mg Prunus persica PRUPE_ppa015724mg N
Si038695m.g Setaria italica Si038695m.g N
Si028242m.g Setaria italica Si028242m.g N
Si024550m.g Setaria italica Si024550m.g N
Si022813m.g Setaria italica Si022813m.g N
Solyc10g049780.1 Solanum lycopersicum Solyc10g049780.1 N
Solyc10g049720.1 Solanum lycopersicum Solyc10g049720.1 N
PGSC0003DMG400003231 Solanum tuberosum PGSC0003DMG400003231 N
Sb08g019780 Sorghum bicolor Sb08g019780 N
Sb01g014580 Sorghum bicolor Sb01g014580 N
Traes_3DL_801E89185 Triticum aestivum Traes_3DL_801E89185 N
TRAES3BF169000100CFD_g Triticum aestivum TRAES3BF169000100CFD_g N
TRIUR3_10349 Triticum urartu TRIUR3_10349 N
GRMZM2G165188 Zea mays GRMZM2G165188 N
AC198518.3_FG005 Zea mays AC198518.3_FG005 N