Alligator_sinensis_CCG005405.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005405.1 T133134_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp740
M00784_2.00 		Mus musculus
MCCCCCCNHN
NDNGGGGGGK		 PBM
Weirauch et al.(2013)
pTH2857 		0.827 0.941
Zfp740
M00143_2.00 		Mus musculus
HMCCCCCNNN
NNNGGGGGKD		 PBM
Badis et al.(2009)
Zfp740_0925 		0.827 0.941
Zfp740
M02935_2.00 		Mus musculus
NCCCCCCCAH
DTGGGGGGGN		 SELEX
Jolma et al.(2013)
Zfp740_1 		0.827 0.941
ZNF740
M02891_2.00 		Homo sapiens
VCCCCCCCMY
RKGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_1 		0.807 0.926
ZNF740
M02892_2.00 		Homo sapiens
VCCCCCCCAY
RTGGGGGGGB		 SELEX
Jolma et al.(2013)
ZNF740_2 		0.807 0.926
ZNF740
M04467_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_eDBD_HT-SELEX 		0.807 0.926
ZNF740
M04469_2.00 		Homo sapiens
NYNCCCCCCCCAC
GTGGGGGGGGNRN		 SELEX
Yin et al.(2017)
ZNF740_FL_HT-SELEX 		0.807 0.926
ZNF740
M10221_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF740_02 		0.807 0.926
ZNF740
M04468_2.00 		Homo sapiens
YYDCCCCCCCCAY
RTGGGGGGGGHRR		 SELEX
Yin et al.(2017)
ZNF740_eDBD_Methyl-HT-SELEX 		0.807 0.926
ZNF740
M04470_2.00 		Homo sapiens
NYVCCCCCCCCAC
GTGGGGGGGGBRN		 SELEX
Yin et al.(2017)
ZNF740_FL_Methyl-HT-SELEX 		0.807 0.926
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005405.1 C2H2 ZF 65 87
Alligator_sinensis_CCG005405.1 C2H2 ZF 93 115
Alligator_sinensis_CCG005405.1 C2H2 ZF 121 142

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014864 Ailuropoda melanoleuca ENSAMEG00000014864 I
Alligator_sinensis_CCG001391.4 Alligator sinensis Alligator_sinensis_CCG001391.4 I
MAZ Anolis carolinensis ENSACAG00000014698 I
ENSBTAP00000026016-D1 Bos grunniens ENSBTAP00000026016-D1 I
MAZ Cavia porcellus ENSCPOG00000019886 I
ENSECAG00000024341 Equus caballus ENSECAG00000024341 I
ENSGMOG00000001761 Gadus morhua ENSGMOG00000001761 I
ENSGMOG00000016794 Gadus morhua ENSGMOG00000016794 N
ENSGACG00000007577 Gasterosteus aculeatus ENSGACG00000007577 N
ENSGACG00000014840 Gasterosteus aculeatus ENSGACG00000014840 I
MAZ Homo sapiens ENSG00000103495 D
ENSSTOG00000027842 Ictidomys tridecemlineatus ENSSTOG00000027842 I
Maz Mus musculus ENSMUSG00000030678 D
Myotis_brandtii_MAZ_10014461 Myotis brandtii Myotis_brandtii_MAZ_10014461 I
ENSNLEG00000007559 Nomascus leucogenys ENSNLEG00000007559 I
ENSONIG00000011463 Oreochromis niloticus ENSONIG00000011463 N
ENSORLG00000006188 Oryzias latipes ENSORLG00000006188 N
ENSORLG00000000210 Oryzias latipes ENSORLG00000000210 N
MAZ Otolemur garnettii ENSOGAG00000033940 I
MAZ Pan troglodytes ENSPTRG00000007968 I
Maz Rattus norvegicus ENSRNOG00000055082 I
ENSSHAG00000009478 Sarcophilus harrisii ENSSHAG00000009478 I
MAZ Sus scrofa ENSSSCG00000025321 I
ENSTRUG00000004091 Takifugu rubripes ENSTRUG00000004091 N
si:ch211-166g5.4 Takifugu rubripes ENSTRUG00000008158 N
ENSXMAG00000018598 Xiphophorus maculatus ENSXMAG00000018598 N