CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Alligator_sinensis_CCG007024.1 *(Alligator sinensis)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	Alligator_sinensis_CCG007024.1	T133188_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Zbtb12 M00146_2.00	Mus musculus	NGTTCTARRN	NYYTAGAACN	PBM Badis et al.(2009) Zbtb12_2932	0.823	0.971
ZBTB12 M04633_2.00	Homo sapiens	RGCTGRRCCGCGYN	NRCGCGGYYCAGCY	SELEX Yin et al.(2017) ZBTB12_eDBD_HT-SELEX_1	0.823	0.971
ZBTB12 M04634_2.00	Homo sapiens	AVGACGGCAGGCCB	VGGCCTGCCGTCBT	SELEX Yin et al.(2017) ZBTB12_eDBD_HT-SELEX_2	0.823	0.971
ZBTB12 M08389_2.00	Homo sapiens	CTAGAACMB	VKGTTCTAG	ChIP-seq Schmitges et al.(2016) Q9Y330_1-3.RCADE	0.823	0.971
ZBTB12 M08269_2.00	Homo sapiens	NNRDTCTAGAACVYNNN	NNNRBGTTCTAGAHYNN	ChIP-seq Najafabadi et al.(2015b) ZBTB12	0.823	0.971
ZBTB12 M04635_2.00	Homo sapiens	AGCTGRRCCGCGYN	NRCGCGGYYCAGCT	SELEX Yin et al.(2017) ZBTB12_eDBD_Methyl-HT-SELEX_1	0.823	0.971
ZBTB12 M04636_2.00	Homo sapiens	RMGACGDCAGGCCW	WGGCCTGHCGTCKY	SELEX Yin et al.(2017) ZBTB12_eDBD_Methyl-HT-SELEX_2	0.823	0.971
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Alligator sinensis* TFs