Alligator_sinensis_CCG007024.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG007024.1 T133188_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zbtb12
M00146_2.00 		Mus musculus
NGTTCTARRN
NYYTAGAACN		 PBM
Badis et al.(2009)
Zbtb12_2932 		0.823 0.971
ZBTB12
M04633_2.00 		Homo sapiens
RGCTGRRCCGCGYN
NRCGCGGYYCAGCY		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_1 		0.823 0.971
ZBTB12
M04634_2.00 		Homo sapiens
AVGACGGCAGGCCB
VGGCCTGCCGTCBT		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_2 		0.823 0.971
ZBTB12
M08389_2.00 		Homo sapiens
CTAGAACMB
VKGTTCTAG		 ChIP-seq
Schmitges et al.(2016)
Q9Y330_1-3.RCADE 		0.823 0.971
ZBTB12
M08269_2.00 		Homo sapiens
NNRDTCTAGAACVYNNN
NNNRBGTTCTAGAHYNN		 ChIP-seq
Najafabadi et al.(2015b)
ZBTB12 		0.823 0.971
ZBTB12
M04635_2.00 		Homo sapiens
AGCTGRRCCGCGYN
NRCGCGGYYCAGCT		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_1 		0.823 0.971
ZBTB12
M04636_2.00 		Homo sapiens
RMGACGDCAGGCCW
WGGCCTGHCGTCKY		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_2 		0.823 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG007024.1 C2H2 ZF 323 345
Alligator_sinensis_CCG007024.1 C2H2 ZF 351 373
Alligator_sinensis_CCG007024.1 C2H2 ZF 379 402

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000012921 Ailuropoda melanoleuca ENSAMEG00000012921 I 0.823
ZBTB12 Bos taurus ENSBTAG00000032031 I 0.823
ZBTB12 Canis familiaris ENSCAFG00000000674 I 0.823
ZBTB12 Felis catus ENSFCAG00000031296 I 0.823
ZBTB12 Homo sapiens ENSG00000204366 D 0.823
ENSGGOG00000015638 Gorilla gorilla ENSGGOG00000015638 I 0.823
ZBTB12 Microcebus murinus ENSMICG00000003600 I 0.823
ZBTB12 Macaca mulatta ENSMMUG00000011683 I 0.823
ENSMODG00000015096 Monodelphis domestica ENSMODG00000015096 I 0.823
ENSMPUG00000018357 Mustela putorius furo ENSMPUG00000018357 I 0.823
Zbtb12 Mus musculus ENSMUSG00000049823 D 0.823
ZBTB12 Otolemur garnettii ENSOGAG00000031042 I 0.823
ENSPANG00000003484 Papio anubis ENSPANG00000003484 I 0.823
ZBTB12 Pan troglodytes ENSPTRG00000017993 I 0.823
ZBTB12 Pteropus vampyrus ENSPVAG00000005130 I 0.823
Zbtb12 Rattus norvegicus ENSRNOG00000000418 I 0.823
ENSSHAG00000008383 Sarcophilus harrisii ENSSHAG00000008383 I 0.823
ZBTB12 Sus scrofa ENSSSCG00000001421 I 0.823
ENSSTOG00000027411 Ictidomys tridecemlineatus ENSSTOG00000027411 I 0.823
Myotis_brandtii_ZBTB12_10007235 Myotis brandtii Myotis_brandtii_ZBTB12_10007235 I 0.823
ZBTB12 Anolis carolinensis ENSACAG00000011189 I 0.820
Ogr11440 Ophisaurus gracilis Ogr11440 I 0.820
Pvit_00817 Pogona vitticeps Pvit_00817 I 0.820
zbtb12.L Xenopus laevis XB-GENE-865454 I 0.820
XP_002943018 Xenopus tropicalis XP_002943018 I 0.820
ENSLACG00000006007 Latimeria chalumnae ENSLACG00000006007 I 0.807