XP_002943018 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002943018 T145865_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zbtb12
M00146_2.00 		Mus musculus
NGTTCTARRN
NYYTAGAACN		 PBM
Badis et al.(2009)
Zbtb12_2932 		0.824 0.986
ZBTB12
M04633_2.00 		Homo sapiens
RGCTGRRCCGCGYN
NRCGCGGYYCAGCY		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_1 		0.824 0.986
ZBTB12
M04634_2.00 		Homo sapiens
AVGACGGCAGGCCB
VGGCCTGCCGTCBT		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_HT-SELEX_2 		0.824 0.986
ZBTB12
M08389_2.00 		Homo sapiens
CTAGAACMB
VKGTTCTAG		 ChIP-seq
Schmitges et al.(2016)
Q9Y330_1-3.RCADE 		0.824 0.986
ZBTB12
M08269_2.00 		Homo sapiens
NNRDTCTAGAACVYNNN
NNNRBGTTCTAGAHYNN		 ChIP-seq
Najafabadi et al.(2015b)
ZBTB12 		0.824 0.986
ZBTB12
M04635_2.00 		Homo sapiens
AGCTGRRCCGCGYN
NRCGCGGYYCAGCT		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_1 		0.824 0.986
ZBTB12
M04636_2.00 		Homo sapiens
RMGACGDCAGGCCW
WGGCCTGHCGTCKY		 SELEX
Yin et al.(2017)
ZBTB12_eDBD_Methyl-HT-SELEX_2 		0.824 0.986
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002943018 C2H2 ZF 360 382
XP_002943018 C2H2 ZF 388 410
XP_002943018 C2H2 ZF 416 439

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
zbtb12.L Xenopus laevis XB-GENE-865454 I 0.827
ZBTB12 Anolis carolinensis ENSACAG00000011189 I 0.824
ENSAMEG00000012921 Ailuropoda melanoleuca ENSAMEG00000012921 I 0.824
ZBTB12 Bos taurus ENSBTAG00000032031 I 0.824
ZBTB12 Canis familiaris ENSCAFG00000000674 I 0.824
ZBTB12 Felis catus ENSFCAG00000031296 I 0.824
ZBTB12 Homo sapiens ENSG00000204366 D 0.824
ENSGGOG00000015638 Gorilla gorilla ENSGGOG00000015638 I 0.824
ZBTB12 Microcebus murinus ENSMICG00000003600 I 0.824
ZBTB12 Macaca mulatta ENSMMUG00000011683 I 0.824
ENSMODG00000015096 Monodelphis domestica ENSMODG00000015096 I 0.824
ENSMPUG00000018357 Mustela putorius furo ENSMPUG00000018357 I 0.824
Zbtb12 Mus musculus ENSMUSG00000049823 D 0.824
ZBTB12 Otolemur garnettii ENSOGAG00000031042 I 0.824
ENSPANG00000003484 Papio anubis ENSPANG00000003484 I 0.824
ZBTB12 Pan troglodytes ENSPTRG00000017993 I 0.824
ZBTB12 Pteropus vampyrus ENSPVAG00000005130 I 0.824
Zbtb12 Rattus norvegicus ENSRNOG00000000418 I 0.824
ENSSHAG00000008383 Sarcophilus harrisii ENSSHAG00000008383 I 0.824
ZBTB12 Sus scrofa ENSSSCG00000001421 I 0.824
ENSSTOG00000027411 Ictidomys tridecemlineatus ENSSTOG00000027411 I 0.824
Myotis_brandtii_ZBTB12_10007235 Myotis brandtii Myotis_brandtii_ZBTB12_10007235 I 0.824
Ogr11440 Ophisaurus gracilis Ogr11440 I 0.824
Pvit_00817 Pogona vitticeps Pvit_00817 I 0.824
Alligator_sinensis_CCG007024.1 Alligator sinensis Alligator_sinensis_CCG007024.1 I 0.820
ENSLACG00000006007 Latimeria chalumnae ENSLACG00000006007 I 0.811