Alligator_sinensis_CCG008208.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG008208.1 T133220_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ovol2
M08993_2.00 		Mus musculus
HCCGTTAN
NTAACGGD		 Misc
Kulakovskiy et al.(2013)
OVOL2_MOUSE.H11MO.0.C 		0.812 0.935
OVOL2
M00235_2.00 		Homo sapiens
NCCGYTANNN
NNNTARCGGN		 PBM
Barrera et al.(2016)
OVOL2_REF 		0.797 0.924
OVOL2
M04445_2.00 		Homo sapiens
NNHCCGYTANNHN
NDNNTARCGGDNN		 SELEX
Yin et al.(2017)
OVOL2_eDBD_HT-SELEX 		0.797 0.924
OVOL2
M04447_2.00 		Homo sapiens
DDWCCGTTABNHN
NDNVTAACGGWHH		 SELEX
Yin et al.(2017)
OVOL2_FL_HT-SELEX 		0.797 0.924
OVOL2
M10207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MOVOB_01 		0.797 0.924
OVOL2
M04446_2.00 		Homo sapiens
NNWCCGTTANNHN
NDNNTAACGGWNN		 SELEX
Yin et al.(2017)
OVOL2_eDBD_Methyl-HT-SELEX 		0.797 0.924
OVOL2
M04448_2.00 		Homo sapiens
DDWCCGTTABNHN
NDNVTAACGGWHH		 SELEX
Yin et al.(2017)
OVOL2_FL_Methyl-HT-SELEX 		0.797 0.924
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG008208.1 C2H2 ZF 114 136
Alligator_sinensis_CCG008208.1 C2H2 ZF 140 164
Alligator_sinensis_CCG008208.1 C2H2 ZF 170 193
Alligator_sinensis_CCG008208.1 C2H2 ZF 209 232

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMAG_05753 Allomyces macrogynus AMAG_05753 N 0.000
AMAG_08626 Allomyces macrogynus AMAG_08626 N 0.000
AMAG_10054 Allomyces macrogynus AMAG_10054 N 0.000