Cmyd_10017172 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017172 T134450_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.817 0.957
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.817 0.957
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.817 0.957
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.815 0.949
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.815 0.949
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.815 0.949
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.815 0.949
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.815 0.949
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.815 0.949
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.805 0.942
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.789 0.855
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.787 0.899
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.787 0.899
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.787 0.899
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.787 0.899
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.787 0.899
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.787 0.899
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.787 0.899
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.787 0.899
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.785 0.891
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017172 C2H2 ZF 119 142
Cmyd_10017172 C2H2 ZF 148 170
Cmyd_10017172 C2H2 ZF 176 198
Cmyd_10017172 C2H2 ZF 204 226
Cmyd_10017172 C2H2 ZF 232 254
Cmyd_10017172 C2H2 ZF 260 283

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.787
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.791
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.822
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.791
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.789
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.822
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.791
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.791
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.804
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.784
GFI1B Bos taurus ENSBTAG00000012772 I 0.804
GFI1 Bos taurus ENSBTAG00000016723 I 0.787
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.781
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.791
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.787
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.815
Aan_R000889 Calypte anna Aan_R000889 I 0.791
Aan_R008865 Calypte anna Aan_R008865 I 0.822
GFI1B Canis familiaris ENSCAFG00000019877 I 0.815
GFI1 Canis familiaris ENSCAFG00000020155 I 0.787
CapteG45287 Capitella teleta CapteG45287 I 0.766
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.784
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.806
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.789
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.817
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.786
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.778
gfi1aa Danio rerio ENSDARG00000020746 I 0.787
gfi1ab Danio rerio ENSDARG00000044457 I 0.789
gfi1b Danio rerio ENSDARG00000079947 I 0.799
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.787
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.815
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.809
GF15430 Drosophila ananassae FBgn0092455 I 0.789
GG10437 Drosophila erecta FBgn0102746 I 0.789
GH13715 Drosophila grimshawi FBgn0121191 I 0.789
sens-2 Drosophila melanogaster FBgn0051632 D 0.789
GI23984 Drosophila mojavensis FBgn0146708 I 0.789
GL26188 Drosophila persimilis FBgn0163770 I 0.789
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.789
GM16223 Drosophila sechellia FBgn0171139 I 0.789
GJ21268 Drosophila virilis FBgn0208401 I 0.789
GK24242 Drosophila willistoni FBgn0226203 I 0.789
GE14143 Drosophila yakuba FBgn0231766 I 0.789
GFI1 Equus caballus ENSECAG00000006647 I 0.787
GFI1B Equus caballus ENSECAG00000008127 I 0.815
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.787
GFI1 Felis catus ENSFCAG00000005914 I 0.787
GFI1B Felis catus ENSFCAG00000027147 I 0.813
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.822
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.791
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.771
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.801
GFI1B Gallus gallus ENSGALG00000003478 I 0.822
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.791
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.778
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.779
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.797
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.822
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.791
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.787
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.815
GFI1 Homo sapiens ENSG00000162676 D 0.787
GFI1B Homo sapiens ENSG00000165702 D 0.815
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.787
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.820
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.815
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.787
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.787
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.799
LotgiG129344 Lottia gigantea LotgiG129344 I 0.774
LotgiG83709 Lottia gigantea LotgiG83709 I 0.780
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.787
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.804
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.817
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.784
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.787
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.807
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.822
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.791
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.787
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.814
MDOA011065 Musca domestica MDOA011065 I 0.789
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.787
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.815
Gfi1b Mus musculus ENSMUSG00000026815 D 0.817
Gfi1 Mus musculus ENSMUSG00000029275 D 0.787
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.790
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.804
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.787
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.773
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.787
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.815
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.787
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.789
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.773
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.787
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.789
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.807
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.815
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.773
gfi1b Oryzias latipes ENSORLG00000014390 I 0.785
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.805
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.787
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.815
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.787
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.817
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.791
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.824
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.779
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.773
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.791
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.786
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.815
GFI1B Procavia capensis ENSPCAG00000012329 I 0.805
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.787
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.787
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.815
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.761
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.779
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.788
GFI1B Sus scrofa ENSSSCG00000005737 I 0.813
GFI1 Sus scrofa ENSSSCG00000006902 I 0.787
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.791
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.789
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.789
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.777
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.780
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.793
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.789
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.787
Tal_R001363 Tyto alba Tal_R001363 I 0.822
Tal_R006464 Tyto alba Tal_R006464 I 0.791
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.799
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.799
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.787
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.773