Gfo_R007918 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R007918 T135762_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB6
M08364_2.00 		Homo sapiens
SBNGCTCCAKVDYCN
NGRHBMTGGAGCNVS		 ChIP-seq
Schmitges et al.(2016)
Q15916.MEME 		0.807 0.967
ZBTB6
M08940_2.00 		Homo sapiens
NRGCTCCAKCDYC
GRHGMTGGAGCYN		 Misc
Kulakovskiy et al.(2013)
ZBTB6_HUMAN.H11MO.0.C 		0.807 0.967
ZBTB6
M10307_2.00 		Homo sapiens
BGGCTCYAKSRYC
GRYSMTRGAGCCV		 Transfac
Matys et al.(2006)
V$ZID_01 		0.807 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R007918 C2H2 ZF 308 330
Gfo_R007918 C2H2 ZF 333 355
Gfo_R007918 C2H2 ZF 361 383
Gfo_R007918 C2H2 ZF 389 412

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017837 Ailuropoda melanoleuca ENSAMEG00000017837 I
ENSP00000301727-D1 Bos grunniens ENSP00000301727-D1 I
E4F1 Callithrix jacchus ENSCJAG00000015000 I
E4F1 Cavia porcellus ENSCPOG00000002052 I
ENSCSAG00000010850 Chlorocebus sabaeus ENSCSAG00000010850 I
E4F1 Dasypus novemcinctus ENSDNOG00000016503 I
E4f1 Dipodomys ordii ENSDORG00000001751 I
E4F1 Equus caballus ENSECAG00000008036 I
E4F1 Gorilla gorilla ENSGGOG00000014241 I
E4F1 Homo sapiens ENSG00000167967 D
ENSSTOG00000013171 Ictidomys tridecemlineatus ENSSTOG00000013171 I
E4F1 Loxodonta africana ENSLAFG00000000725 I
ENSP00000301727 Macaca fascicularis ENSP00000301727 I
E4F1 Macaca mulatta ENSMMUG00000019235 I
E4F1 Microcebus murinus ENSMICG00000005892 I
ENSMPUG00000015378 Mustela putorius furo ENSMPUG00000015378 I
E4f1 Mus musculus ENSMUSG00000024137 D
Myotis_brandtii_E4f1_10005619 Myotis brandtii Myotis_brandtii_E4f1_10005619 I
E4F1 Myotis lucifugus ENSMLUG00000016786 I
ENSNLEG00000009261 Nomascus leucogenys ENSNLEG00000009261 I
E4F1 Ochotona princeps ENSOPRG00000002573 I
E4F1 Oryctolagus cuniculus ENSOCUG00000025484 I
E4F1 Otolemur garnettii ENSOGAG00000006594 I
ENSOARG00000017910 Ovis aries ENSOARG00000017910 I
ENSPANG00000017016 Papio anubis ENSPANG00000017016 I
E4F1 Procavia capensis ENSPCAG00000004337 I
E4F1 Pteropus vampyrus ENSPVAG00000005098 I
E4f1 Rattus norvegicus ENSRNOG00000009224 I
E4F1 Sus scrofa ENSSSCG00000008047 I
E4F1 Tursiops truncatus ENSTTRG00000008208 I