Pm005390 (Prunus mume)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pm005390 T136795_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.935
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.913
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.848
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.848
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm005390 C2H2 ZF 112 134
Pm005390 C2H2 ZF 167 189

Links

Other C2H2 ZF family TFs
Other Prunus mume TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I
GB53867 Apis mellifera GB53867 I
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I
SNAI1 Bos taurus ENSBTAG00000014554 I
SNAI1 Callithrix jacchus ENSCJAG00000000518 I
SNAI1 Canis familiaris ENSCAFG00000011499 I
SNAI1 Cavia porcellus ENSCPOG00000026663 I
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I
snai1a Danio rerio ENSDARG00000056995 I
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I
ENSDNOG00000024891 Dasypus novemcinctus ENSDNOG00000024891 I
GM16048 Drosophila sechellia FBgn0170964 I
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I
SNAI1 Equus caballus ENSECAG00000009787 I
SNAI1 Felis catus ENSFCAG00000010558 I
ENSGMOG00000017815 Gadus morhua ENSGMOG00000017815 I
snai1a Gasterosteus aculeatus ENSGACG00000010147 I
SNAI1 Gorilla gorilla ENSGGOG00000024422 I
SNAI1 Homo sapiens ENSG00000124216 D
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I
SNAI1 Loxodonta africana ENSLAFG00000030265 I
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I
ENSONIG00000020305 Oreochromis niloticus ENSONIG00000020305 I
SNAI1 Oryctolagus cuniculus ENSOCUG00000005422 I
SNAI1 Otolemur garnettii ENSOGAG00000030111 I
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I
SNAI1 Pan troglodytes ENSPTRG00000013614 I
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I
ENSPFOG00000015709 Poecilia formosa ENSPFOG00000015709 I
SNAI1 Procavia capensis ENSPCAG00000011934 I
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I
Snai1 Rattus norvegicus ENSRNOG00000009594 I
snai3 Takifugu rubripes ENSTRUG00000002385 I
snai1a Takifugu rubripes ENSTRUG00000012293 I
ENSTNIG00000004434 Tetraodon nigroviridis ENSTNIG00000004434 I
snai1a Tetraodon nigroviridis ENSTNIG00000007311 I
SNAI1 Tupaia belangeri ENSTBEG00000012262 I
SNAI1 Tursiops truncatus ENSTTRG00000002029 I
snai3 Xenopus tropicalis XB-GENE-488030 I
ENSXMAG00000009637 Xiphophorus maculatus ENSXMAG00000009637 I