e_gw.471.22.1 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 e_gw.471.22.1 T138304_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLIS3
M02880_2.00 		Homo sapiens
CTTYGTGGGGGGTM
KACCCCCCACRAAG		 SELEX
Jolma et al.(2013)
GLIS3_1 		0.807 0.936
GLIS3
M10169_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_01 		0.807 0.936
GLIS3
M10170_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_Q6_01 		0.807 0.936
GLIS3
M10171_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_Q6 		0.807 0.936
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.471.22.1 C2H2 ZF 1 24
e_gw.471.22.1 C2H2 ZF 33 60
e_gw.471.22.1 C2H2 ZF 67 90
e_gw.471.22.1 C2H2 ZF 96 120
e_gw.471.22.1 C2H2 ZF 126 148

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATBZIP25 Arabidopsis lyrata scaffold_502576.1 N 0.000
BZIP25 Arabidopsis thaliana AT3G54620 I 0.000
Bo3g032910 Brassica oleracea Bo3g032910 N 0.000
Bo4g119810 Brassica oleracea Bo4g119810 I 0.000
Bo8g084770 Brassica oleracea Bo8g084770 I 0.000
Bra000102 Brassica rapa Bra000102 I 0.000
Bra007083 Brassica rapa Bra007083 I 0.000
Bra014802 Brassica rapa Bra014802 I 0.000
Bra024310 Brassica rapa Bra024310 I 0.000
PK11472.1 Cannabis sativa PK11472.1 I 0.000
PK05128.1 Cannabis sativa PK05128.1 D 0.000
Cagra.0562s0051 Capsella grandiflora Cagra.0562s0051 I 0.000
Carubv10017372m.g Capsella rubella Carubv10017372m.g I 0.000
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I 0.000
Ca_03753 Cicer arietinum Ca_03753 I 0.000
Cla015037 Citrullus lanatus Cla015037 I 0.000
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I 0.000
Cucsa.388800 Cucumis sativus Cucsa.388800 I 0.000
Thhalv10010426m.g Eutrema salsugineum Thhalv10010426m.g I 0.000
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I 0.000
Lus10018759.g Linum usitatissimum Lus10018759.g I 0.000
MDP0000176747 Malus domestica MDP0000176747 I 0.000
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I 0.000
Pm020231 Prunus mume Pm020231 I 0.000
PRUPE_ppa005367mg Prunus persica PRUPE_ppa005367mg I 0.000