estExt_fgenesh1_pg.C_4070009 (Physcomitrella patens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_fgenesh1_pg.C_4070009 T138522_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_191000049
M01473_2.00 		Physcomitrella patens
NNNSCGCCRN
NYGGCGSNNN		 PBM
Najafabadi et al.(2015a)
pTH11165 		0.811 0.985
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_4070009 C2H2 ZF 411 435
estExt_fgenesh1_pg.C_4070009 C2H2 ZF 467 490
estExt_fgenesh1_pg.C_4070009 C2H2 ZF 519 544

Links

Other C2H2 ZF family TFs
Other Physcomitrella patens TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ADAC004531 Anopheles darlingi ADAC004531 I
AMAM017211 Anopheles maculatus AMAM017211 I
AMEC001670 Anopheles melas AMEC001670 I
AMEM013717 Anopheles merus AMEM013717 I
ASTEI04517 Anopheles stephensi ASTEI04517 I
YQE_09490 Dendroctonus ponderosae YQE_09490 I
ENSDORG00000004435 Dipodomys ordii ENSDORG00000004435 I
sd Drosophila melanogaster FBgn0003345 D
HHAL001589-PA Halyomorpha halys HHAL001589-PA I
MESCA009331 Megaselia scalaris MESCA009331 I
PXEA_0002816501 Protopolystoma xenopodis PXEA_0002816501 N
SMAR011013 Strigamia maritima SMAR011013 I
SMAR013465 Strigamia maritima SMAR013465 I
D917_06432 Trichinella nativa D917_06432 I
EFV53558 Trichinella spiralis EFV53558 I