fgenesh2_pg.scaffold_136000067 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh2_pg.scaffold_136000067 T139164_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.774 0.904
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.774 0.904
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.774 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_136000067 C2H2 ZF 334 356
fgenesh2_pg.scaffold_136000067 C2H2 ZF 362 384
fgenesh2_pg.scaffold_136000067 C2H2 ZF 660 682
fgenesh2_pg.scaffold_136000067 C2H2 ZF 688 710
fgenesh2_pg.scaffold_136000067 C2H2 ZF 718 741

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002077 Ailuropoda melanoleuca ENSAMEG00000002077 I 0.000
ENSAPLG00000010379 Anas platyrhynchos ENSAPLG00000010379 I 0.000
Afo_R006000 Aptenodytes forsteri Afo_R006000 I 0.000
ENSAMXG00000002922 Astyanax mexicanus ENSAMXG00000002922 I 0.000
ENSP00000260045-D1 Bos grunniens ENSP00000260045-D1 I 0.000
THAP12 Bos taurus ENSBTAG00000031609 I 0.000
Brh_R010409 Buceros rhinoceros Brh_R010409 I 0.000
Cmyd_10020724 Chelonia mydas Cmyd_10020724 I 0.000
ENSCHOG00000009417 Choloepus hoffmanni ENSCHOG00000009417 I 0.000
ENSCHOG00000007628 Choloepus hoffmanni ENSCHOG00000007628 I 0.000
prkrirb Danio rerio ENSDARG00000020964 D 0.000
ENSDNOG00000000774 Dasypus novemcinctus ENSDNOG00000000774 I 0.000
THAP12 Equus caballus ENSECAG00000021982 I 0.000
THAP12 Erinaceus europaeus ENSEEUG00000003060 I 0.000
THAP12 Felis catus ENSFCAG00000006764 I 0.000
ENSGMOG00000010245 Gadus morhua ENSGMOG00000010245 I 0.000
THAP12 Gallus gallus ENSGALG00000000838 D 0.000
prkrirb Gasterosteus aculeatus ENSGACG00000010435 I 0.000
Gfo_R003337 Geospiza fortis Gfo_R003337 I 0.000
ENSGGOG00000023767 Gorilla gorilla ENSGGOG00000023767 I 0.000
ENSMMUP00000040972 Macaca fascicularis ENSMMUP00000040972 I 0.000
ENSP00000260045 Macaca fascicularis ENSP00000260045 I 0.000
ENSMMUG00000013164 Macaca mulatta ENSMMUG00000013164 I 0.000
ENSMMUG00000022399 Macaca mulatta ENSMMUG00000022399 I 0.000
ENSMEUG00000011765 Macropus eugenii ENSMEUG00000011765 I 0.000
THAP12 Meleagris gallopavo ENSMGAG00000015267 I 0.000
THAP12 Monodelphis domestica ENSMODG00000005315 I 0.000
ENSMLUG00000000564 Myotis lucifugus ENSMLUG00000000564 I 0.000
ENSONIG00000011168 Oreochromis niloticus ENSONIG00000011168 I 0.000
THAP12 Ornithorhynchus anatinus ENSOANG00000000831 I 0.000
ENSOGAG00000024748 Otolemur garnettii ENSOGAG00000024748 N 0.000
ENSOARG00000012702 Ovis aries ENSOARG00000012702 I 0.000
THAP12 Pan troglodytes ENSPTRG00000004091 I 0.000
Pvit_02386 Pogona vitticeps Pvit_02386 I 0.000
ENSPCAG00000008407 Procavia capensis ENSPCAG00000008407 I 0.000
THAP12 Taeniopygia guttata ENSTGUG00000013565 I 0.000
prkrirb Takifugu rubripes ENSTRUG00000007070 I 0.000
ENSTSYG00000001778 Tarsius syrichta ENSTSYG00000001778 I 0.000
ENSTSYG00000000689 Tarsius syrichta ENSTSYG00000000689 I 0.000
prkrirb Tetraodon nigroviridis ENSTNIG00000003292 D 0.000
ENSTTRG00000012793 Tursiops truncatus ENSTTRG00000012793 I 0.000
THAP12 Tursiops truncatus ENSTTRG00000013287 I 0.000
Tal_R010930 Tyto alba Tal_R010930 I 0.000
thap12 Xenopus tropicalis XB-GENE-6073216 I 0.000