Bostr.3148s0159 (Boechera stricta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Bostr.3148s0159 T142618_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.827 0.935
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.820 0.891
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.820 0.891
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.820 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.848
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3148s0159.1.p C2H2 ZF 75 97
Bostr.3148s0159.1.p C2H2 ZF 118 141

Links

Other C2H2 ZF family TFs
Other Boechera stricta TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015711 Ailuropoda melanoleuca ENSAMEG00000015711 I 0.000
Alligator_sinensis_CCG004791.1 Alligator sinensis Alligator_sinensis_CCG004791.1 I 0.000
PRDM6 Anolis carolinensis ENSACAG00000003401 I 0.000
ENSAMXG00000012588 Astyanax mexicanus ENSAMXG00000012588 I 0.000
ENSBTAP00000027421-D1 Bos grunniens ENSBTAP00000027421-D1 I 0.000
PRDM6 Bos taurus ENSBTAG00000020578 I 0.000
PRDM6 Callithrix jacchus ENSCJAG00000017318 I 0.000
PRDM6 Canis familiaris ENSCAFG00000023666 I 0.000
ENSCPOG00000004258 Cavia porcellus ENSCPOG00000004258 I 0.000
ENSCSAG00000014599 Chlorocebus sabaeus ENSCSAG00000014599 I 0.000
PRDM6 Choloepus hoffmanni ENSCHOG00000003085 I 0.000
PRDM6 Dasypus novemcinctus ENSDNOG00000006337 I 0.000
PRDM6 Equus caballus ENSECAG00000004532 I 0.000
PRDM6 Erinaceus europaeus ENSEEUG00000005543 I 0.000
PRDM6 Felis catus ENSFCAG00000026249 I 0.000
ENSFALG00000007522 Ficedula albicollis ENSFALG00000007522 I 0.000
PRDM6 Gallus gallus ENSGALG00000005351 I 0.000
PRDM6 Homo sapiens ENSG00000061455 D 0.000
ENSLOCG00000008663 Lepisosteus oculatus ENSLOCG00000008663 I 0.000
PRDM6 Loxodonta africana ENSLAFG00000000396 I 0.000
ENSP00000261364 Macaca fascicularis ENSP00000261364 I 0.000
ENSMMUG00000010652 Macaca mulatta ENSMMUG00000010652 I 0.000
ENSMEUG00000011470 Macropus eugenii ENSMEUG00000011470 I 0.000
ENSMICG00000007754 Microcebus murinus ENSMICG00000007754 I 0.000
PRDM6 Monodelphis domestica ENSMODG00000013415 I 0.000
ENSMPUG00000012965 Mustela putorius furo ENSMPUG00000012965 I 0.000
Prdm6 Mus musculus ENSMUSG00000069378 I 0.000
Myotis_brandtii_PRDM6_10015768 Myotis brandtii Myotis_brandtii_PRDM6_10015768 I 0.000
PRDM6 Myotis lucifugus ENSMLUG00000010064 I 0.000
ENSNLEG00000012064 Nomascus leucogenys ENSNLEG00000012064 I 0.000
PRDM6 Ochotona princeps ENSOPRG00000004020 I 0.000
Ogr18847 Ophisaurus gracilis Ogr18847 I 0.000
ENSONIG00000013818 Oreochromis niloticus ENSONIG00000013818 I 0.000
ENSOANG00000001527 Ornithorhynchus anatinus ENSOANG00000001527 I 0.000
PRDM6 Oryctolagus cuniculus ENSOCUG00000003454 I 0.000
ENSORLG00000017089 Oryzias latipes ENSORLG00000017089 I 0.000
ENSOARG00000018873 Ovis aries ENSOARG00000018873 I 0.000
PRDM6 Pan troglodytes ENSPTRG00000017180 I 0.000
ENSPANG00000020936 Papio anubis ENSPANG00000020936 I 0.000
ENSPSIG00000007714 Pelodiscus sinensis ENSPSIG00000007714 I 0.000
ENSPFOG00000000918 Poecilia formosa ENSPFOG00000000918 I 0.000
Pvit_11059 Pogona vitticeps Pvit_11059 I 0.000
PRDM6 Pteropus vampyrus ENSPVAG00000006781 I 0.000
Prdm6 Rattus norvegicus ENSRNOG00000030486 I 0.000
ENSSHAG00000009542 Sarcophilus harrisii ENSSHAG00000009542 I 0.000
PRDM6 Sus scrofa ENSSSCG00000014238 I 0.000
PRDM6 Takifugu rubripes ENSTRUG00000011582 I 0.000
ENSTSYG00000009407 Tarsius syrichta ENSTSYG00000009407 I 0.000
ENSTNIG00000004450 Tetraodon nigroviridis ENSTNIG00000004450 I 0.000
PRDM6 Tupaia belangeri ENSTBEG00000010088 I 0.000
PRDM6 Tursiops truncatus ENSTTRG00000006808 I 0.000
prdm6 Xenopus tropicalis XB-GENE-854907 I 0.000