Carubv10017660m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10017660m.g T142729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.827 0.978
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.827 0.957
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.802 0.870
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.776 0.717
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.776 0.717
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.776 0.717
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.775 0.717
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.766 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.766 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017660m C2H2 ZF 201 223
Carubv10017660m C2H2 ZF 254 276

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000014482 Anas platyrhynchos ENSAPLG00000014482 N
ENSAMXG00000000627 Astyanax mexicanus ENSAMXG00000000627 N
ENSBTAG00000019024 Bos taurus ENSBTAG00000019024 N
Brh_R011697 Buceros rhinoceros Brh_R011697 N
JAZF1 Callithrix jacchus ENSCJAG00000008331 N
Cmyd_10020957 Chelonia mydas Cmyd_10020957 N
ENSCSAG00000014355 Chlorocebus sabaeus ENSCSAG00000014355 N
jazf1b Danio rerio ENSDARG00000056793 N
jazf1a Danio rerio ENSDARG00000102551 N
ENSETEG00000002956 Echinops telfairi ENSETEG00000002956 N
ENSFCAG00000023035 Felis catus ENSFCAG00000023035 N
ENSGALG00000011126 Gallus gallus ENSGALG00000011126 N
jazf1b Gasterosteus aculeatus ENSGACG00000008216 N
JAZF1 Gorilla gorilla ENSGGOG00000011408 N
JAZF1 Homo sapiens ENSG00000153814 N
ENSSTOG00000005946 Ictidomys tridecemlineatus ENSSTOG00000005946 N
ENSLACG00000009439 Latimeria chalumnae ENSLACG00000009439 N
ENSLOCG00000011888 Lepisosteus oculatus ENSLOCG00000011888 N
ENSMGAG00000010727 Meleagris gallopavo ENSMGAG00000010727 N
Jazf1 Mus musculus ENSMUSG00000063568 N
Myotis_brandtii_JAZF1_10034022 Myotis brandtii Myotis_brandtii_JAZF1_10034022 N
ENSMLUG00000013130 Myotis lucifugus ENSMLUG00000013130 N
ENSONIG00000002950 Oreochromis niloticus ENSONIG00000002950 N
ENSONIG00000004607 Oreochromis niloticus ENSONIG00000004607 N
jazf1b Oryzias latipes ENSORLG00000007516 N
JAZF1 Otolemur garnettii ENSOGAG00000029759 N
JAZF1 Pan troglodytes ENSPTRG00000019027 N
ENSPFOG00000004320 Poecilia formosa ENSPFOG00000004320 N
ENSPFOG00000002162 Poecilia formosa ENSPFOG00000002162 N
ENSPPYG00000017691 Pongo abelii ENSPPYG00000017691 N
ENSPCAG00000012434 Procavia capensis ENSPCAG00000012434 N
Jazf1 Rattus norvegicus ENSRNOG00000027026 N
JAZF1 Sus scrofa ENSSSCG00000016691 N
JAZF1 Taeniopygia guttata ENSTGUG00000002953 N
jazf1a Takifugu rubripes ENSTRUG00000018220 N
jazf1b Takifugu rubripes ENSTRUG00000015434 N
ENSTSYG00000007474 Tarsius syrichta ENSTSYG00000007474 N
jazf1a Tetraodon nigroviridis ENSTNIG00000009204 N
JAZF1 Tursiops truncatus ENSTTRG00000015292 N
Tal_R005424 Tyto alba Tal_R005424 N
jazf1 Xenopus tropicalis XB-GENE-950886 N
ENSXMAG00000013895 Xiphophorus maculatus ENSXMAG00000013895 N