Gorai.005G232300 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.005G232300 T143018_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.913
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.913
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.848
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.848
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.848
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.696
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G232300.1 C2H2 ZF 106 128
Gorai.005G232300.1 C2H2 ZF 160 182

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI005393 Acyrthosiphon pisum ACYPI005393 N 0.000
AAEL014286 Aedes aegypti AAEL014286 I 0.000
AALB001524 Anopheles albimanus AALB001524 I 0.000
AARA004970 Anopheles arabiensis AARA004970 N 0.000
AATE004999 Anopheles atroparvus AATE004999 N 0.000
ACHR001068 Anopheles christyi ACHR001068 N 0.000
ACOM030425 Anopheles coluzzii ACOM030425 N 0.000
ACUA005970 Anopheles culicifacies ACUA005970 N 0.000
ADAC005010 Anopheles darlingi ADAC005010 I 0.000
ADIR011315 Anopheles dirus ADIR011315 N 0.000
AEPI008902 Anopheles epiroticus AEPI008902 N 0.000
AFAF000916 Anopheles farauti AFAF000916 N 0.000
AFUN003983 Anopheles funestus AFUN003983 N 0.000
AGAP008160 Anopheles gambiae AGAP008160 N 0.000
AMEC009973 Anopheles melas AMEC009973 N 0.000
AMEM015420 Anopheles merus AMEM015420 N 0.000
AMIN006115 Anopheles minimus AMIN006115 N 0.000
AQUA000993 Anopheles quadriannulatus AQUA000993 N 0.000
ASIS021966 Anopheles sinensis ASIS021966 N 0.000
ASTEI09594 Anopheles stephensi ASTEI09594 N 0.000
GB44791 Apis mellifera GB44791 I 0.000
Cflo_09641--XP_393231.3_APIME Camponotus floridanus Cflo_09641--XP_393231.3_APIME I 0.000
CpipJ_CPIJ004862 Culex pipiens CpipJ_CPIJ004862 I 0.000
CPIJ004862 Culex quinquefasciatus CPIJ004862 I 0.000
KGM_15963 Danaus plexippus KGM_15963 N 0.000
GF19984 Drosophila ananassae FBgn0096991 I 0.000
GG19364 Drosophila erecta FBgn0111568 I 0.000
GH11855 Drosophila grimshawi FBgn0119334 I 0.000
Myb Drosophila melanogaster FBgn0002914 D 0.000
GI14170 Drosophila mojavensis FBgn0136923 I 0.000
GL24710 Drosophila persimilis FBgn0162298 I 0.000
GM22518 Drosophila sechellia FBgn0177388 I 0.000
GD24674 Drosophila simulans FBgn0196001 I 0.000
GJ18431 Drosophila virilis FBgn0205590 I 0.000
GK16252 Drosophila willistoni FBgn0218254 I 0.000
GE16012 Drosophila yakuba FBgn0233564 I 0.000
HHAL003965-PA Halyomorpha halys HHAL003965-PA N 0.000
HMEL017165 Heliconius melpomene HMEL017165 I 0.000
LCUP002256 Lucilia cuprina LCUP002256 I 0.000
LLOJ006683 Lutzomyia longipalpis LLOJ006683 I 0.000
NV17529 Nasonia vitripennis NV17529 N 0.000
PHUM518530 Pediculus humanus PHUM518530 N 0.000
PPAI005590 Phlebotomus papatasi PPAI005590 I 0.000
L798_09102 Zootermopsis nevadensis L798_09102 N 0.000