Gorai.006G176000 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.006G176000 T143028_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.804
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.826
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.787 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.787 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.774 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.764 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G176000.1 C2H2 ZF 39 61
Gorai.006G176000.1 C2H2 ZF 87 109

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

392 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g08834 Acanthocheilonema viteae nAv.1.0.1.g08834 N
ACYPI003006 Acyrthosiphon pisum ACYPI003006 I
ANCCAN_04319 Ancylostoma caninum ANCCAN_04319 I
ANCCEY_00577 Ancylostoma ceylanicum ANCCEY_00577 I
ANCDUO_12144 Ancylostoma duodenale ANCDUO_12144 N
ACAC_0001093601 Angiostrongylus cantonensis ACAC_0001093601 I
ACOC_0000846801 Angiostrongylus costaricensis ACOC_0000846801 I
ASIM_0001377801 Anisakis simplex ASIM_0001377801 N
AGAP010201 Anopheles gambiae AGAP010201 I
GB48999 Apis mellifera GB48999 I
ASU_09033 Ascaris suum ASU_09033 N
BGIBMGA010353 Bombyx mori BGIBMGA010353 I
Bm4538 Brugia malayi Bm4538 N
BTMF_0001307601 Brugia timori BTMF_0001307601 N
CBN22234 Caenorhabditis brenneri CBN22234 I
CBG10034 Caenorhabditis briggsae CBG10034 I
hlh-11 Caenorhabditis elegans WBGene00001955 D
CJA09019 Caenorhabditis japonica CJA09019 I
CRE25281 Caenorhabditis remanei CRE25281 I
CGOC_0000858101 Cylicostephanus goldi CGOC_0000858101 I
KGM_15765 Danaus plexippus KGM_15765 I
DICVIV_02775 Dictyocaulus viviparus DICVIV_02775 I
nDi.2.2.2.g07826 Dirofilaria immitis nDi.2.2.2.g07826 N
GF21721 Drosophila ananassae FBgn0098721 I
GG24179 Drosophila erecta FBgn0116312 I
GH10096 Drosophila grimshawi FBgn0117577 I
crp Drosophila melanogaster FBgn0001994 D
GI14377 Drosophila mojavensis FBgn0137129 I
GL14101 Drosophila persimilis FBgn0151706 I
GA20511 Drosophila pseudoobscura FBgn0080505 I
GM17917 Drosophila sechellia FBgn0172824 I
GD21926 Drosophila simulans FBgn0193342 I
GJ16254 Drosophila virilis FBgn0203439 I
GK24289 Drosophila willistoni FBgn0226250 I
GE19372 Drosophila yakuba FBgn0236717 I
EEL_0000428401 Elaeophora elaphi EEL_0000428401 N
GPUH_0001027101 Gongylonema pulchrum GPUH_0001027101 N
HCOI01121900 Haemonchus contortus HCOI01121900 I
HPLM_0001857601 Haemonchus placei HPLM_0001857601 I
HMEL008759 Heliconius melpomene HMEL008759 I
nLs.2.1.2.g06012 Litomosoides sigmodontis nLs.2.1.2.g06012 N
LOAG_07256 Loa loa LOAG_07256 N
LLOJ009485 Lutzomyia longipalpis LLOJ009485 I
NECAME_04511 Necator americanus NECAME_04511 I
NBR_0000263101 Nippostrongylus brasiliensis NBR_0000263101 I
NBR_0000299801 Nippostrongylus brasiliensis NBR_0000299801 I
nOo.2.0.1.g02551 Onchocerca ochengi nOo.2.0.1.g02551 N
WBGene00244598 Onchocerca volvulus WBGene00244598 N
scaffold60-EXSNAP2012.12 Pristionchus exspectatus scaffold60-EXSNAP2012.12 I
PPA14541 Pristionchus pacificus PPA14541 I
SVUK_0000451101 Strongylus vulgaris SVUK_0000451101 I
TELCIR_07248 Teladorsagia circumcincta TELCIR_07248 I
TELCIR_11314 Teladorsagia circumcincta TELCIR_11314 I
TCNE_0001886101 Toxocara canis TCNE_0001886101 N
L798_07621 Zootermopsis nevadensis L798_07621 I