Pavir.J00893 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J00893 T143396_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.756 0.739
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.756 0.717
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00893.1.p C2H2 ZF 48 75
Pavir.J00893.1.p C2H2 ZF 107 129

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

327 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
H311_03668 Anncaliia algerae H311_03668 I 0.000
H311_03229 Anncaliia algerae H311_03229 I 0.000
ACHR000964 Anopheles christyi ACHR000964 I 0.000
ADAC008363 Anopheles darlingi ADAC008363 I 0.000
ADIR000346 Anopheles dirus ADIR000346 I 0.000
AFUN006147 Anopheles funestus AFUN006147 I 0.000
ASIS007770 Anopheles sinensis ASIS007770 I 0.000
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.000
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 0.000
BATDEDRAFT_7506 Batrachochytrium dendrobatidis BATDEDRAFT_7506 I 0.000
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.000
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.000
Aan_R005414 Calypte anna Aan_R005414 I 0.000
SRF Cavia porcellus ENSCPOG00000022327 I 0.000
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.000
EDEG_01732 Edhazardia aedis EDEG_01732 I 0.000
CAD25705 Encephalitozoon cuniculi CAD25705 N 0.000
Eint_071710 Encephalitozoon intestinalis Eint_071710 N 0.000
EROM_071660 Encephalitozoon romaleae EROM_071660 N 0.000
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 0.000
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.000
Gfo_R009695 Geospiza fortis Gfo_R009695 I 0.000
SRF Gorilla gorilla ENSGGOG00000006293 I 0.000
SRF Loxodonta africana ENSLAFG00000010278 I 0.000
MESCA001358 Megaselia scalaris MESCA001358 I 0.000
MVLG_06278 Microbotryum violaceum MVLG_06278 I 0.000
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 0.000
NEPG_02192 Nematocida parisii ertm1 NEPG_02192 I 0.000
NBO_404g0004 Nosema bombycis NBO_404g0004 I 0.000
NBO_73g0004 Nosema bombycis NBO_73g0004 I 0.000
NBO_81g0015 Nosema bombycis NBO_81g0015 I 0.000
NCER_102270 Nosema ceranae NCER_102270 I 0.000
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.000
M896_081720 Ordospora colligata M896_081720 N 0.000
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.000
RHTO_07423 Rhodosporidium toruloides RHTO_07423 I 0.000
RHTO_04199 Rhodosporidium toruloides RHTO_04199 I 0.000
SINV23954 Solenopsis invicta SINV23954 I 0.000
SRF Sorex araneus ENSSARG00000003401 I 0.000
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.000
gw1.5.808.1 Sporobolomyces roseus gw1.5.808.1 I 0.000
SLOPH_1335 Spraguea lophii SLOPH_1335 I 0.000
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.000
SRF Taeniopygia guttata ENSTGUG00000004738 I 0.000
THOM_1181 Trachipleistophora hominis THOM_1181 I 0.000
TriadG59812 Trichoplax adhaerens TriadG59812 I 0.000
VCUG_02078 Vavraia culicis VCUG_02078 I 0.000
SRF Vicugna pacos ENSVPAG00000008912 I 0.000