Pavir.J01834 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J01834 T143398_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.763 0.791
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.763 0.791
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01834.1.p C2H2 ZF 236 258
Pavir.J01834.1.p C2H2 ZF 258 284

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI000347 Acyrthosiphon pisum ACYPI000347 I
AAEL000341 Aedes aegypti AAEL000341 I
BHLHE22 Anolis carolinensis ENSACAG00000016834 I
AALB000147 Anopheles albimanus AALB000147 I
AARA008760 Anopheles arabiensis AARA008760 I
AATE004759 Anopheles atroparvus AATE004759 I
ACHR009203 Anopheles christyi ACHR009203 I
ACOM027056 Anopheles coluzzii ACOM027056 I
ACUA002460 Anopheles culicifacies ACUA002460 I
ADAC006720 Anopheles darlingi ADAC006720 I
ADIR006306 Anopheles dirus ADIR006306 I
AEPI003977 Anopheles epiroticus AEPI003977 I
AFAF017781 Anopheles farauti AFAF017781 I
AFUN005189 Anopheles funestus AFUN005189 I
AGAP009227 Anopheles gambiae AGAP009227 I
AMAM023008 Anopheles maculatus AMAM023008 I
AMEC008134 Anopheles melas AMEC008134 I
AMEM014256 Anopheles merus AMEM014256 I
AMIN009758 Anopheles minimus AMIN009758 I
AQUA010475 Anopheles quadriannulatus AQUA010475 I
ASIS008310 Anopheles sinensis ASIS008310 I
ASTEI052404 Anopheles stephensi ASTEI052404 I
GB45050 Apis mellifera GB45050 I
Afo_R010903 Aptenodytes forsteri Afo_R010903 I
ENSAMXG00000025627 Astyanax mexicanus ENSAMXG00000025627 I
ENSAMXG00000026338 Astyanax mexicanus ENSAMXG00000026338 I
ACEP10921 Atta cephalotes ACEP10921 I
BGLB010842 Biomphalaria glabrata BGLB010842 I
BGIBMGA003134 Bombyx mori BGIBMGA003134 I
ENSBTAP00000014445-D1 Bos grunniens ENSBTAP00000014445-D1 I
BHLHE23 Bos taurus ENSBTAG00000010873 I
BHLHE22 Bos taurus ENSBTAG00000033173 I
fgenesh2_pg.scaffold_122000082 Branchiostoma floridae fgenesh2_pg.scaffold_122000082 I
BHLHE22 Callithrix jacchus ENSCJAG00000009234 I
BHLHE23 Callithrix jacchus ENSCJAG00000010053 I
Cflo_04767--XP_001122321.1_APIME Camponotus floridanus Cflo_04767--XP_001122321.1_APIME I
CapteG184404 Capitella teleta CapteG184404 I
BHLHE22 Cavia porcellus ENSCPOG00000004652 I
ENSCSAG00000018550 Chlorocebus sabaeus ENSCSAG00000018550 I
ENSCSAG00000018736 Chlorocebus sabaeus ENSCSAG00000018736 I
CGI_10006402 Crassostrea gigas CGI_10006402 I
CpipJ_CPIJ000843 Culex pipiens CpipJ_CPIJ000843 I
CPIJ000843 Culex quinquefasciatus CPIJ000843 I
bhlhe23 Danio rerio ENSDARG00000037588 I
bhlhe22 Danio rerio ENSDARG00000058039 I
DAPPUDRAFT_17020 Daphnia pulex DAPPUDRAFT_17020 I
BHLHE22 Dasypus novemcinctus ENSDNOG00000004738 I
BHLHE23 Dasypus novemcinctus ENSDNOG00000036826 I
YQE_08596 Dendroctonus ponderosae YQE_08596 I
ENSDORG00000012788 Dipodomys ordii ENSDORG00000012788 I
GF14803 Drosophila ananassae FBgn0091830 I
GG21094 Drosophila erecta FBgn0113277 I
GH11626 Drosophila grimshawi FBgn0119106 I
Oli Drosophila melanogaster FBgn0032651 D
GI17928 Drosophila mojavensis FBgn0140669 I
GL14513 Drosophila persimilis FBgn0152118 I
GA18959 Drosophila pseudoobscura FBgn0078958 I
GM17248 Drosophila sechellia FBgn0172159 I
GD24118 Drosophila simulans FBgn0195474 I
GJ17701 Drosophila virilis FBgn0204870 I
GK18164 Drosophila willistoni FBgn0220163 I
GE12799 Drosophila yakuba FBgn0230520 I
ECPE_0000755301 Echinostoma caproni ECPE_0000755301 I
D915_05889 Fasciola hepatica D915_05889 I
ENSFALG00000010468 Ficedula albicollis ENSFALG00000010468 I
ENSGMOG00000014009 Gadus morhua ENSGMOG00000014009 I
ENSGMOG00000019833 Gadus morhua ENSGMOG00000019833 I
bhlhe22 Gasterosteus aculeatus ENSGACG00000002995 I
BHLHE23 Gorilla gorilla ENSGGOG00000025870 I
Hsal_10753--XP_001122321.1_APIME Harpegnathos saltator Hsal_10753--XP_001122321.1_APIME I
HelroG128595 Helobdella robusta HelroG128595 I
BHLHE23 Homo sapiens ENSG00000125533 D
BHLHE22 Homo sapiens ENSG00000180828 D
ISCW009607 Ixodes scapularis ISCW009607 I
ENSLACG00000007038 Latimeria chalumnae ENSLACG00000007038 I
ENSLACG00000016169 Latimeria chalumnae ENSLACG00000016169 I
ENSLOCG00000017814 Lepisosteus oculatus ENSLOCG00000017814 I
ENSLOCG00000018362 Lepisosteus oculatus ENSLOCG00000018362 I
LDEC023792 Leptinotarsa decemlineata LDEC023792 I
LCUP009688 Lucilia cuprina LCUP009688 I
LLOJ009613 Lutzomyia longipalpis LLOJ009613 I
ENSMMUG00000028979 Macaca mulatta ENSMMUG00000028979 I
MESCA002512 Megaselia scalaris MESCA002512 I
BHLHE23 Meleagris gallopavo ENSMGAG00000006134 I
MCINX007709 Melitaea cinxia MCINX007709 I
BHLHE22 Monodelphis domestica ENSMODG00000008228 I
BHLHE23 Monodelphis domestica ENSMODG00000023267 I
MDOA001134 Musca domestica MDOA001134 I
Bhlhe22 Mus musculus ENSMUSG00000025128 D
Bhlhe23 Mus musculus ENSMUSG00000045493 I
BHLHE22 Myotis lucifugus ENSMLUG00000002156 I
NV11426 Nasonia vitripennis NV11426 I
ENSNLEG00000019167 Nomascus leucogenys ENSNLEG00000019167 I
Ogr12490 Ophisaurus gracilis Ogr12490 I
ENSONIG00000020419 Oreochromis niloticus ENSONIG00000020419 I
ENSONIG00000021146 Oreochromis niloticus ENSONIG00000021146 I
BHLHE23 Ornithorhynchus anatinus ENSOANG00000004969 I
BHLHE22 Oryctolagus cuniculus ENSOCUG00000012968 I
bhlhe22 Oryzias latipes ENSORLG00000008625 I
bhlhe23 Oryzias latipes ENSORLG00000009742 I
BHLHE22 Otolemur garnettii ENSOGAG00000034883 I
ENSOARG00000011555 Ovis aries ENSOARG00000011555 I
ENSOARG00000016973 Ovis aries ENSOARG00000016973 I
BHLHE23 Pan troglodytes ENSPTRG00000013728 I
ENSPANG00000006045 Papio anubis ENSPANG00000006045 I
ENSPANG00000014258 Papio anubis ENSPANG00000014258 I
PHUM507440 Pediculus humanus PHUM507440 I
ENSPFOG00000020648 Poecilia formosa ENSPFOG00000020648 I
ENSPFOG00000020723 Poecilia formosa ENSPFOG00000020723 I
Pvit_14990 Pogona vitticeps Pvit_14990 I
ENSPPYG00000018628 Pongo abelii ENSPPYG00000018628 I
BHLHE23 Procavia capensis ENSPCAG00000008163 I
Bhlhe23 Rattus norvegicus ENSRNOG00000010312 I
Bhlhe22 Rattus norvegicus ENSRNOG00000021745 I
Sakowv30001655m.g Saccoglossus kowalevskii Sakowv30001655m.g I
ENSSHAG00000008128 Sarcophilus harrisii ENSSHAG00000008128 I
SCUD_0001512501 Schistosoma curassoni SCUD_0001512501 I
A_00716 Schistosoma haematobium A_00716 I
Sjc_0013770 Schistosoma japonicum Sjc_0013770 I
Smp_000620 Schistosoma mansoni Smp_000620 I
SMRZ_0001201801 Schistosoma margrebowiei SMRZ_0001201801 I
SMTD_0000281901 Schistosoma mattheei SMTD_0000281901 I
SROB_0002375401 Schistosoma rodhaini SROB_0002375401 I
SMU15011543 Schmidtea mediterranea SMU15011543 I
SINV14285 Solenopsis invicta SINV14285 I
SMAR007739 Strigamia maritima SMAR007739 I
SPU_004028 Strongylocentrotus purpuratus SPU_004028 I
SPU_026601 Strongylocentrotus purpuratus SPU_026601 I
BHLHE22 Sus scrofa ENSSSCG00000006222 I
bhlhe22 Takifugu rubripes ENSTRUG00000003506 I
bhlhe23 Takifugu rubripes ENSTRUG00000005237 I
bhlhe22 Takifugu rubripes ENSTRUG00000007963 I
tetur13g02560 Tetranychus urticae tetur13g02560 I
bhlhe22 Tetraodon nigroviridis ENSTNIG00000012697 I
bhlhe23 Tetraodon nigroviridis ENSTNIG00000017879 I
TC014712 Tribolium castaneum TC014712 I
TRE_0001403601 Trichobilharzia regenti TRE_0001403601 I
bhlhe23 Xenopus tropicalis XB-GENE-1018550 I
bhlhe22 Xenopus tropicalis XB-GENE-6457792 I
ENSXMAG00000019916 Xiphophorus maculatus ENSXMAG00000019916 I
ENSXMAG00000020159 Xiphophorus maculatus ENSXMAG00000020159 I