9516_YHL027W (Saccharomyces mikatae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 9516_YHL027W T146015_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RIM101
M00030_2.00 		Saccharomyces cerevisiae
BCTTGGCRHN
NDYGCCAAGV		 PBM
Badis et al.(2008)
RIM101_2030 		0.827 1.000
RIM101
M07460_2.00 		Saccharomyces cerevisiae
CTTGGCR
YGCCAAG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0368.1 		0.827 1.000
RIM101
M08529_2.00 		Saccharomyces cerevisiae
TGCCAAG
CTTGGCA		 Misc
DeBoer et al.(2011)
YHL027W_600 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
9516_YHL027W C2H2 ZF 146 171
9516_YHL027W C2H2 ZF 182 206
9516_YHL027W C2H2 ZF 212 234

Links

Other C2H2 ZF family TFs
Other Saccharomyces mikatae TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla008708 Citrullus lanatus Cla008708 N
DILT_0000361501 Diphyllobothrium latum DILT_0000361501 N
ECPE_0001108901 Echinostoma caproni ECPE_0001108901 N
D915_11518 Fasciola hepatica D915_11518 N
LPERR07G21940 Leersia perrieri LPERR07G21940 N
OBART07G25200 Oryza barthii OBART07G25200 N
ORGLA07G0195200 Oryza glaberrima ORGLA07G0195200 N
OGLUM07G25180 Oryza glumaepatula OGLUM07G25180 N
BGIOSGA023775 Oryza indica BGIOSGA023775 N
OLONG_013854 Oryza longistaminata OLONG_013854 N
ONIVA07G24840 Oryza nivara ONIVA07G24840 N
ORUFI07G26110 Oryza rufipogon ORUFI07G26110 N
OS07G0660200 Oryza sativa OS07G0660200 N
SSLN_0001386501 Schistocephalus solidus SSLN_0001386501 N
SPER_0000910001 Spirometra erinaceieuropaei SPER_0000910001 N