CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

RIM101 *(Saccharomyces cerevisiae)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	YHL027W	T131841_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RIM101 M00030_2.00	Saccharomyces cerevisiae	BCTTGGCRHN	NDYGCCAAGV	PBM Badis et al.(2008) RIM101_2030	(Direct)	(Direct)
RIM101 M07460_2.00	Saccharomyces cerevisiae	CTTGGCR	YGCCAAG	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0368.1	(Direct)	(Direct)
RIM101 M08529_2.00	Saccharomyces cerevisiae	TGCCAAG	CTTGGCA	Misc DeBoer et al.(2011) YHL027W_600	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M00030_2.00	C2H2 ZF	51	76	LYCKWDNCGMIFNQPELLYNHLCHDH
M00030_2.00	C2H2 ZF	87	111	LNCHWGDCTTKTEKRDHITSHLRVH
M00030_2.00	C2H2 ZF	117	139	FGCSTCSKKFKRPQDLKKHLKIH

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
YHL027W	C2H2 ZF	146	171	LYCKWDNCGMIFNQPELLYNHLCHDH
YHL027W	C2H2 ZF	182	206	LNCHWGDCTTKTEKRDHITSHLRVH
YHL027W	C2H2 ZF	212	234	FGCSTCSKKFKRPQDLKKHLKIH

Links
Other C2H2 ZF family TFs
Other *Saccharomyces cerevisiae* TFs