CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

chr3.LjT39G24.10.nd *(Lotus japonicus)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	chr3.LjT39G24.10.nd	T146058_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT3G46070 M06813_2.00	Arabidopsis thaliana	HYHHYHTCACTYHHH	DDDRAGTGADRDDRD	Dap-seq OMalley et al.(2016) AT3G46070_col_a	0.777	0.826
AT3G53600 M01856_2.00	Arabidopsis thaliana	NNHASWN	NWSTDNN	PBM Weirauch et al.(2014) pTH7188	0.772	0.783
AT3G53600 M00858_2.00	Arabidopsis thaliana	NNNNRSWN	NWSYNNNN	PBM Franco-Zorrilla et al.(2014) ZAT18	0.772	0.783
ZAT7 M01855_2.00	Arabidopsis thaliana	NVDBRCACTNNNN	NNNNAGTGYVHBN	PBM Weirauch et al.(2014) pTH7540	0.766	0.783
AT5G04390 M01857_2.00	Arabidopsis thaliana	NNHRSWN	NWSYDNN	PBM Weirauch et al.(2014) pTH7158	0.762	0.761
AT5G04390 M06819_2.00	Arabidopsis thaliana	HHHHWHCACTN	NAGTGDWDDDD	Dap-seq OMalley et al.(2016) At5g04390_col200_a	0.762	0.761
AT5G03510 M00860_2.00	Arabidopsis thaliana	NNHRSWN	NWSYDNN	PBM Franco-Zorrilla et al.(2014) ZAT14	0.761	0.717
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Lotus japonicus* TFs