nRc.2.0.1.g12535 (Romanomermis culicivorax)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nRc.2.0.1.g12535 T155451_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.787 0.891
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.787 0.891
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.773 0.855
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.773 0.855
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.773 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t12535-RA C2H2 ZF 267 289
nRc.2.0.1.t12535-RA C2H2 ZF 295 317
nRc.2.0.1.t12535-RA C2H2 ZF 323 345
nRc.2.0.1.t12535-RA C2H2 ZF 351 373
nRc.2.0.1.t12535-RA C2H2 ZF 383 405
nRc.2.0.1.t12535-RA C2H2 ZF 411 434

Links

Other C2H2 ZF family TFs
Other Romanomermis culicivorax TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB010747 Anopheles albimanus AALB010747 I 0.000
AARA005525 Anopheles arabiensis AARA005525 I 0.000
AATE016567 Anopheles atroparvus AATE016567 I 0.000
ACHR008909 Anopheles christyi ACHR008909 I 0.000
ACOM023078 Anopheles coluzzii ACOM023078 I 0.000
ACUA022787 Anopheles culicifacies ACUA022787 I 0.000
AEPI002124 Anopheles epiroticus AEPI002124 I 0.000
AFUN001809 Anopheles funestus AFUN001809 I 0.000
AGAP011096 Anopheles gambiae AGAP011096 I 0.000
AMAM003092 Anopheles maculatus AMAM003092 I 0.000
AMEC014175 Anopheles melas AMEC014175 I 0.000
AMEM011145 Anopheles merus AMEM011145 I 0.000
AMIN008497 Anopheles minimus AMIN008497 I 0.000
AQUA005181 Anopheles quadriannulatus AQUA005181 I 0.000
ASIS014644 Anopheles sinensis ASIS014644 I 0.000
BGIBMGA013687 Bombyx mori BGIBMGA013687 I 0.000
KGM_12457 Danaus plexippus KGM_12457 I 0.000
GF13466 Drosophila ananassae FBgn0090495 I 0.000
GG19941 Drosophila erecta FBgn0112141 I 0.000
slbo Drosophila melanogaster FBgn0005638 D 0.000
GI18345 Drosophila mojavensis FBgn0141084 I 0.000
GL20490 Drosophila persimilis FBgn0158085 I 0.000
GA18129 Drosophila pseudoobscura FBgn0078137 I 0.000
GM11843 Drosophila sechellia FBgn0166784 I 0.000
GE11469 Drosophila yakuba FBgn0229274 I 0.000
HMEL005312 Heliconius melpomene HMEL005312 I 0.000
LLOJ006051 Lutzomyia longipalpis LLOJ006051 I 0.000
MDOA000553 Musca domestica MDOA000553 I 0.000
PPAI007786 Phlebotomus papatasi PPAI007786 I 0.000