CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SROB_0001323001
(
Schistosoma rodhaini
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SROB_0001323001
T156947_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SROB_0001323001-mRNA-1
C2H2 ZF
779
801
FVCMVCSRQFTRSDMLVRHANVH
SROB_0001323001-mRNA-1
C2H2 ZF
807
829
FECTICGQAFSRSDHLSTHQRTH
SROB_0001323001-mRNA-1
C2H2 ZF
835
857
YQCSLCYYSASRRDMITRHLRVH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma rodhaini
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
csin103227
Clonorchis sinensis
csin103227
N
0.790
ECPE_0001002501
Echinostoma caproni
ECPE_0001002501
N
0.766
T265_09709
Opisthorchis viverrini
T265_09709
N
0.774
SCUD_0000616201
Schistosoma curassoni
SCUD_0000616201
N
0.817
A_00934
Schistosoma haematobium
A_00934
N
0.817
Smp_149680
Schistosoma mansoni
Smp_149680
N
0.793
SMRZ_0001591901
Schistosoma margrebowiei
SMRZ_0001591901
N
0.817
SMTD_0001267901
Schistosoma mattheei
SMTD_0001267901
N
0.817
SMU15002537
Schmidtea mediterranea
SMU15002537
N
0.764
SMU15006028
Schmidtea mediterranea
SMU15006028
N
0.764