CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000183865
(
Malus domestica
)
CBF/NF-Y
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02045 (CBFB_NFYA)
IPR001289
MDP0000183865
T160709_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HAP2
M08452_2.00
Saccharomyces cerevisiae
TTGGH
DCCAA
COMPILED
Mathelier et al.(2014)
MA0313.1
0.818
0.818
NFYA
M08104_2.00
Homo sapiens
NSTGATTGGYB
VRCCAATCASN
ChIP-seq
Mathelier et al.(2014)
MA0060.3
0.727
0.727
NFYA
M09018_2.00
Homo sapiens
YKBYSATTGGYYRV
BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A
0.727
0.727
Nfya
M09019_2.00
Mus musculus
YKBYSATTGGYYRV
BYRRCCAATSRVMR
Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A
0.727
0.727
NFYA
M10403_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_02
0.727
0.727
NFYA
M10404_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFYA_Q5
0.727
0.727
NFYA
M10405_2.00
Homo sapiens
NYTGATTGGYTAVH
DBTARCCAATCARN
Transfac
Matys et al.(2006)
V$NFY_C
0.727
0.727
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000183865
CBF/NF-Y
1
22
PYLHESRHLHALRRARGCGGRF
Links
Other
CBF/NF-Y
family TFs
Other
Malus domestica
TFs
648 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
csin108446
Clonorchis sinensis
csin108446
N
T265_03041
Opisthorchis viverrini
T265_03041
N
PXEA_0001482701
Protopolystoma xenopodis
PXEA_0001482701
N
SCUD_0002117401
Schistosoma curassoni
SCUD_0002117401
N
A_06784
Schistosoma haematobium
A_06784
N
Sjc_0048660
Schistosoma japonicum
Sjc_0048660
N
Smp_068240
Schistosoma mansoni
Smp_068240
N
SMTD_0001402601
Schistosoma mattheei
SMTD_0001402601
N
TRE_0001278101
Trichobilharzia regenti
TRE_0001278101
N