Cmyd_10021069 (Chelonia mydas)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cmyd_10021069 T165303_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.973 0.973
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.973 0.973
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10021069 CSD 1 37

Links

Other CSD family TFs
Other Chelonia mydas TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_036870 Albugo laibachii ALNC14_036870 N 0.000
e_gw1.3.305.1 Phytophthora capsici e_gw1.3.305.1 N 0.000
PITG_01135 Phytophthora infestans PITG_01135 N 0.000
fgenesh_scip_prom.46568.10844 Phytophthora kernoviae fgenesh_scip_prom.46568.10844 N 0.000
fgenesh_scip_prom.28083.9880 Phytophthora lateralis fgenesh_scip_prom.28083.9880 N 0.000
F443_05618 Phytophthora parasitica F443_05618 N 0.000
Phyra74345 Phytophthora ramorum Phyra74345 N 0.000
Phyra84059 Phytophthora ramorum Phyra84059 N 0.000
Physo127312 Phytophthora sojae Physo127312 N 0.000
maker-pag1_scaffold_104-snap-gene-0.37 Pythium aphanidermatum maker-pag1_scaffold_104-snap-gene-0.37 N 0.000
maker-par_contig_359-snap-gene-0.8 Pythium arrhenomanes maker-par_contig_359-snap-gene-0.8 N 0.000
maker-pir_contig_315-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_315-fgenesh-gene-0.0 N 0.000
maker-piw_contig_348-snap-gene-0.7 Pythium iwayamai maker-piw_contig_348-snap-gene-0.7 N 0.000
PYU1_G001938 Pythium ultimum PYU1_G001938 N 0.000
maker-pve_contig_589-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_589-fgenesh-gene-0.0 N 0.000