kdm2b.L (Xenopus laevis)
CxxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02008 (zf-CXXC) IPR002857 XB-GENE-990512 T168707_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KDM2B
M01911_2.00 		Homo sapiens
NNNNNNCGN
NCGNNNNNN		 PBM
Weirauch et al.(2014)
pTH9191 		1.000 1.000
kdm2ba
M01909_2.00 		Danio rerio
NNNNCGN
NCGNNNN		 PBM
Weirauch et al.(2014)
pTH8577 		0.979 0.979
FBXL19
M01916_2.00 		Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN		 PBM
Weirauch et al.(2014)
pTH8570 		0.894 0.894
A6H8I1_DANRE
M01906_2.00 		Danio rerio
CGTACGYA
TRCGTACG		 PBM
Weirauch et al.(2014)
pTH9257 		0.851 0.851
KDM2A
M01915_2.00 		Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH9212 		0.809 0.809
BGIBMGA012843
M01907_2.00 		Bombyx mori
NNCGCGTANVNN
NNBNTACGCGNN		 PBM
Weirauch et al.(2014)
pTH9239 		0.766 0.766
kdm2aa
M01910_2.00 		Danio rerio
NCGNNNNNN
NNNNNNCGN		 PBM
Weirauch et al.(2014)
pTH8585 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH73414 CxxC 45 91

Links

Other CxxC family TFs
Other Xenopus laevis TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_13455 Aegilops tauschii F775_13455 N 0.000
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N 0.000
anac090 Arabidopsis lyrata fgenesh2_kg.6__2228__AT5G22380.1 N 0.000
NAC090 Arabidopsis thaliana AT5G22380 N 0.000
Bostr.26527s0039 Boechera stricta Bostr.26527s0039 N 0.000
Bo9g148540 Brassica oleracea Bo9g148540 N 0.000
Bo3g016870 Brassica oleracea Bo3g016870 N 0.000
Bo2g023870 Brassica oleracea Bo2g023870 N 0.000
Bra002408 Brassica rapa Bra002408 N 0.000
Bra006624 Brassica rapa Bra006624 N 0.000
Bra020188 Brassica rapa Bra020188 N 0.000
Cagra.0846s0014 Capsella grandiflora Cagra.0846s0014 N 0.000
Carubv10001788m.g Capsella rubella Carubv10001788m.g N 0.000
Ca_00818 Cicer arietinum Ca_00818 N 0.000
Cla018691 Citrullus lanatus Cla018691 N 0.000
Cucsa.083530 Cucumis sativus Cucsa.083530 N 0.000
Thhalv10014563m.g Eutrema salsugineum Thhalv10014563m.g N 0.000
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N 0.000
MLOC_60153 Hordeum vulgare MLOC_60153 N 0.000
LPERR12G03220 Leersia perrieri LPERR12G03220 N 0.000
LPERR11G02950 Leersia perrieri LPERR11G02950 N 0.000
cassava32867.m1 Manihot esculenta cassava32867.m1 N 0.000
MTR_7g105170 Medicago truncatula MTR_7g105170 N 0.000
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N 0.000
OBART11G03530 Oryza barthii OBART11G03530 N 0.000
OBART12G03440 Oryza barthii OBART12G03440 N 0.000
OB11G12830 Oryza brachyantha OB11G12830 N 0.000
OB12G13350 Oryza brachyantha OB12G13350 N 0.000
ORGLA12G0180300 Oryza glaberrima ORGLA12G0180300 N 0.000
ORGLA12G0033100 Oryza glaberrima ORGLA12G0033100 N 0.000
ORGLA11G0032800 Oryza glaberrima ORGLA11G0032800 N 0.000
OGLUM11G03170 Oryza glumaepatula OGLUM11G03170 N 0.000
OGLUM12G04110 Oryza glumaepatula OGLUM12G04110 N 0.000
BGIOSGA034823 Oryza indica BGIOSGA034823 N 0.000
BGIOSGA037019 Oryza indica BGIOSGA037019 N 0.000
OMERI11G03230 Oryza meridionalis OMERI11G03230 N 0.000
ONIVA12G03060 Oryza nivara ONIVA12G03060 N 0.000
ONIVA11G03690 Oryza nivara ONIVA11G03690 N 0.000
OPUNC12G03240 Oryza punctata OPUNC12G03240 N 0.000
OPUNC11G03220 Oryza punctata OPUNC11G03220 N 0.000
ORUFI11G03420 Oryza rufipogon ORUFI11G03420 N 0.000
OS11G0154500 Oryza sativa OS11G0154500 N 0.000
OS12G0156100 Oryza sativa OS12G0156100 N 0.000
Pavir.J13106 Panicum virgatum Pavir.J13106 N 0.000
Pavir.J04751 Panicum virgatum Pavir.J04751 N 0.000
Pavir.Hb01808 Panicum virgatum Pavir.Hb01808 N 0.000
Pavir.Ha01768 Panicum virgatum Pavir.Ha01768 N 0.000
Pavir.Bb01366 Panicum virgatum Pavir.Bb01366 N 0.000
POPTR_0016s07690 Populus trichocarpa POPTR_0016s07690 N 0.000
SapurV1A.0974s0010 Salix purpurea SapurV1A.0974s0010 N 0.000
SapurV1A.0630s0010 Salix purpurea SapurV1A.0630s0010 N 0.000
Si025833m.g Setaria italica Si025833m.g N 0.000
Si022966m.g Setaria italica Si022966m.g N 0.000
Si026707m.g Setaria italica Si026707m.g N 0.000
Solyc11g068620.1 Solanum lycopersicum Solyc11g068620.1 N 0.000
PGSC0003DMG400026332 Solanum tuberosum PGSC0003DMG400026332 N 0.000
Sb05g003400 Sorghum bicolor Sb05g003400 N 0.000
Sb03g040720 Sorghum bicolor Sb03g040720 N 0.000
Traes_5DL_43FC1B296 Triticum aestivum Traes_5DL_43FC1B296 N 0.000
GRMZM2G439903 Zea mays GRMZM2G439903 N 0.000
GRMZM2G465835 Zea mays GRMZM2G465835 N 0.000