OLONG_023990 (Oryza longistaminata)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 OLONG_023990 T173335_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw1.38.2.1
M01968_2.00 		Physcomitrella patens
NSGCGCBHHN
NDDVGCGCSN		 PBM
Weirauch et al.(2014)
pTH5707 		0.877 0.877
estExt_gwp_gw1.C_220046
M01225_2.00 		Physcomitrella patens
VGCGCBHHNN
NNDDVGCGCB		 PBM
Lambert et al.(2019)
pTH9809 		0.877 0.877
E2FA
M06871_2.00 		Arabidopsis thaliana
NDDDGGCGCCAWWW
WWWTGGCGCCHHHN		 Dap-seq
OMalley et al.(2016)
E2FA_col_a 		0.862 0.862
E2FA
M06872_2.00 		Arabidopsis thaliana
DDWDGGCGCCAWAD
HTWTGGCGCCHWHH		 Dap-seq
OMalley et al.(2016)
E2FA_colamp_a 		0.862 0.862
E2FA
M08106_2.00 		Arabidopsis thaliana
NVGCGCCAHN
NDTGGCGCBN		 ChIP-seq
Mathelier et al.(2014)
MA1414.1 		0.862 0.862
E2FC
M06870_2.00 		Arabidopsis thaliana
AWDDDGGCGCCAAAR
YTTTGGCGCCHHHWT		 Dap-seq
OMalley et al.(2016)
E2FC_col_a 		0.800 0.800
E2F3
M01964_2.00 		Taeniopygia guttata
NNSGCGCGMN
NKCGCGCSNN		 PBM
Weirauch et al.(2014)
pTH9288 		0.769 0.769
E2f3
M00153_2.00 		Mus musculus
NNNNGCGSNN
NNSCGCNNNN		 PBM
Badis et al.(2009)
E2F3_3752 		0.754 0.754
ENSOANG00000014967
M01962_2.00 		Ornithorhynchus anatinus
NDSGCGCSHN
NDSGCGCSHN		 PBM
Weirauch et al.(2014)
pTH9382 		0.754 0.754
E2F2
M01963_2.00 		Tupaia belangeri
WDVGCGCBHW
WDVGCGCBHW		 PBM
Weirauch et al.(2014)
pTH9291 		0.754 0.754
E2F3
M02956_2.00 		Homo sapiens
RAAAAKGGCGCCAAAANN
NNTTTTGGCGCCMTTTTY		 SELEX
Jolma et al.(2013)
E2F3_1 		0.754 0.754
E2F3
M02957_2.00 		Homo sapiens
DAAAADGGCGCCMWWTTY
RAAWWKGGCGCCHTTTTH		 SELEX
Jolma et al.(2013)
E2F3_2 		0.754 0.754
E2F3
M02958_2.00 		Homo sapiens
NDTTTTGGCGCCAAAABH
DVTTTTGGCGCCAAAAHN		 SELEX
Jolma et al.(2013)
E2F3_3 		0.754 0.754
E2F3
M04701_2.00 		Homo sapiens
DWTTTGGCGCCAAAWH
DWTTTGGCGCCAAAWH		 SELEX
Yin et al.(2017)
E2F3_eDBD_HT-SELEX 		0.754 0.754
E2F3
M09031_2.00 		Homo sapiens
NDGGCGGGAAR
YTTCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F3_HUMAN.H11MO.0.A 		0.754 0.754
E2f3
M09038_2.00 		Mus musculus
DSGCGGGARV
BYTCCCGCSH		 Misc
Kulakovskiy et al.(2013)
E2F3_MOUSE.H11MO.0.A 		0.754 0.754
E2F3
M10454_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q6_01 		0.754 0.754
E2F3
M10455_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F3_Q6 		0.754 0.754
E2F3
M04702_2.00 		Homo sapiens
DTTTTGGCGCCAAAAH
DTTTTGGCGCCAAAAH		 SELEX
Yin et al.(2017)
E2F3_eDBD_Methyl-HT-SELEX 		0.754 0.754
E2F2
M01961_2.00 		Homo sapiens
DNSGCGCSNH
DNSGCGCSNH		 PBM
Weirauch et al.(2014)
pTH9195 		0.738 0.738
E2f2
M00154_2.00 		Mus musculus
NDNNGCGSBN
NVSCGCNNHN		 PBM
Badis et al.(2009)
E2F2_1022 		0.738 0.738
E2F2
M02949_2.00 		Homo sapiens
AAAAATGGCGCCAAAAWD
HWTTTTGGCGCCATTTTT		 SELEX
Jolma et al.(2013)
E2F2_1 		0.738 0.738
E2F2
M02950_2.00 		Homo sapiens
VDTTTTGGCGCCAAAAHN
NDTTTTGGCGCCAAAAHB		 SELEX
Jolma et al.(2013)
E2F2_2 		0.738 0.738
E2F2
M02951_2.00 		Homo sapiens
AAAWWGGCGCCAWTTT
AAAWTGGCGCCWWTTT		 SELEX
Jolma et al.(2013)
E2F2_3 		0.738 0.738
E2F2
M04696_2.00 		Homo sapiens
GCGCGCGCSYW
WRSGCGCGCGC		 SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_1 		0.738 0.738
E2F2
M04697_2.00 		Homo sapiens
NDWWDGGCGCCWWHWN
NWDWWGGCGCCHWWHN		 SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_2 		0.738 0.738
E2F2
M09029_2.00 		Homo sapiens
GGCGCGMAWC
GWTKCGCGCC		 Misc
Kulakovskiy et al.(2013)
E2F2_HUMAN.H11MO.0.B 		0.738 0.738
E2f2
M09039_2.00 		Mus musculus
GGCGCGMAWC
GWTKCGCGCC		 Misc
Kulakovskiy et al.(2013)
E2F2_MOUSE.H11MO.0.B 		0.738 0.738
E2F2
M04698_2.00 		Homo sapiens
SGBGSGCGCGS
SCGCGCSCVCS		 SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_1 		0.738 0.738
E2F2
M04699_2.00 		Homo sapiens
DWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWH		 SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_2 		0.738 0.738
ENSACAG00000013716
M01960_2.00 		Anolis carolinensis
HNVGCGCBND
HNVGCGCBND		 PBM
Weirauch et al.(2014)
pTH9221 		0.723 0.723
E2F4
M02961_2.00 		Homo sapiens
AATGGCGCCAAA
TTTGGCGCCATT		 SELEX
Jolma et al.(2013)
E2F4_1 		0.723 0.723
E2F4
M02962_2.00 		Homo sapiens
TTTGGCGCCAAA
TTTGGCGCCAAA		 SELEX
Jolma et al.(2013)
E2F4_2 		0.723 0.723
E2F4
M04707_2.00 		Homo sapiens
NWWKGGCGCCAAAW
WTTTGGCGCCMWWN		 SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX 		0.723 0.723
E2F4
M08109_2.00 		Homo sapiens
NSGCGGGARVN
NBYTCCCGCSN		 ChIP-seq
Mathelier et al.(2014)
MA0470.1 		0.723 0.723
E2F4
M07942_2.00 		Homo sapiens
SGCGSGARDNNBNVN
NBNVNNHYTCSCGCS		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD 		0.723 0.723
E2F4
M07943_2.00 		Homo sapiens
SGCGGGARDNNBVVN
NBBVNNHYTCCCGCS		 ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD 		0.723 0.723
E2F4
M09036_2.00 		Homo sapiens
VDRGGCGGGRVND
HNBYCCCGCCYHB		 Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A 		0.723 0.723
E2f4
M09037_2.00 		Mus musculus
NRDDGGCGGGRMNN
NNKYCCCGCCHHYN		 Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A 		0.723 0.723
E2F4
M09524_2.00 		Homo sapiens
VGCGSGAADH
DHTTCSCGCB		 Misc
Heinz et al.(2010)
K562-E2F4_GSE31477 		0.723 0.723
E2F4
M10457_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_05 		0.723 0.723
E2F4
M10458_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_Q3 		0.723 0.723
E2F4
M10459_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F4_Q6 		0.723 0.723
E2f5
M09042_2.00 		Mus musculus
NGCGCSAAAN
NTTTSGCGCN		 Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B 		0.708 0.708
efl-1
M08110_2.00 		Caenorhabditis elegans
HNHNSGCGSSAAWWN
NWWTTSSCGCSNDND		 ChIP-seq
Mathelier et al.(2014)
MA0541.1 		0.692 0.692
efl-1
M08197_2.00 		Caenorhabditis elegans
BGCGSSAAWW
WWTTSSCGCV		 ChIP-seq
Contrino et al.(2012)
Mw140 		0.692 0.692
efl-1
M09526_2.00 		Caenorhabditis elegans
WGCAARYGCGCTCYA
TRGAGCGCRYTTGCW		 Misc
Heinz et al.(2010)
cElegans-L1-EFL1_modEncode 		0.692 0.692
E2F1
M02952_2.00 		Homo sapiens
WWDGGCGCCAAW
WTTGGCGCCHWW		 SELEX
Jolma et al.(2013)
E2F1_1 		0.646 0.646
E2F1
M02953_2.00 		Homo sapiens
WWKGGCGCCWWW
WWWGGCGCCMWW		 SELEX
Jolma et al.(2013)
E2F1_2 		0.646 0.646
E2F1
M02954_2.00 		Homo sapiens
WWWKGGCGCCMWWW
WWWKGGCGCCMWWW		 SELEX
Jolma et al.(2013)
E2F1_3 		0.646 0.646
E2F1
M02955_2.00 		Homo sapiens
AAWKGGCGCCAWTW
WAWTGGCGCCMWTT		 SELEX
Jolma et al.(2013)
E2F1_4 		0.646 0.646
E2F1
M04700_2.00 		Homo sapiens
NWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWN		 SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX 		0.646 0.646
E2F1
M07938_2.00 		Homo sapiens
VRRVNRVGCGSGMDS
SHKCSCGCBYNBYYB		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD 		0.646 0.646
E2F1
M09030_2.00 		Homo sapiens
NVNDGGCGGGARVN
NBYTCCCGCCHNBN		 Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A 		0.646 0.646
E2f1
M09041_2.00 		Mus musculus
NDDGGCGGGRVN
NBYCCCGCCHHN		 Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A 		0.646 0.646
E2F1
M09521_2.00 		Homo sapiens
NNGGCGGGAA
TTCCCGCCNN		 Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478 		0.646 0.646
E2F1
M10444_2.00 		Homo sapiens
THVGCGCGAAAAHKR
YMDTTTTCGCGCBDA		 Transfac
Matys et al.(2006)
V$E2F_01 		0.646 0.646
E2F1
M10445_2.00 		Homo sapiens
BHKSGCGCSAAA
TTTSGCGCSMDV		 Transfac
Matys et al.(2006)
V$E2F_03 		0.646 0.646
E2F1
M10446_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_01 		0.646 0.646
E2F1
M10447_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_02 		0.646 0.646
E2F1
M10448_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q3_01 		0.646 0.646
E2F1
M10449_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q3 		0.646 0.646
E2F1
M10450_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4_01 		0.646 0.646
E2F1
M10451_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4_02 		0.646 0.646
E2F1
M10452_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4 		0.646 0.646
E2F1
M10453_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q6 		0.646 0.646
E2f
M08196_2.00 		Drosophila melanogaster
AAWWBSSCGSCAA
TTGSCGSSVWWTT		 ChIP-seq
Contrino et al.(2012)
Mf10 		0.631 0.631
E2F6
M08107_2.00 		Homo sapiens
DGGMGGGARVN
NBYTCCCKCCH		 ChIP-seq
Mathelier et al.(2014)
MA0471.1 		0.615 0.615
E2F6
M07939_2.00 		Homo sapiens
NDSGCGGGARV
BYTCCCGCSHN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F6_UCD 		0.615 0.615
E2F6
M07940_2.00 		Homo sapiens
NDVGCGGGARV
BYTCCCGCBHN		 ChIP-seq
Gerstein et al.(2012)
K562b_E2F6_UCD 		0.615 0.615
E2F6
M07941_2.00 		Homo sapiens
NDSGCGGGARV
BYTCCCGCSHN		 ChIP-seq
Gerstein et al.(2012)
K562_E2F6_HudsonAlpha 		0.615 0.615
E2F6
M09034_2.00 		Homo sapiens
NRGGMGGGARRNN
NNYYTCCCKCCYN		 Misc
Kulakovskiy et al.(2013)
E2F6_HUMAN.H11MO.0.A 		0.615 0.615
E2f6
M09043_2.00 		Mus musculus
NDGGCGGGARVV
BBYTCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F6_MOUSE.H11MO.0.A 		0.615 0.615
E2F6
M09523_2.00 		Homo sapiens
VGCGGGARNN
NNYTCCCGCB		 Misc
Heinz et al.(2010)
Hela-E2F6_GSE31477 		0.615 0.615
E2F6
M10456_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F6_01 		0.615 0.615
E2F
M01959_2.00 		Dictyostelium discoideum
NNGSGCGCSHN
NDSGCGCSCNN		 PBM
Weirauch et al.(2014)
pTH5403 		0.600 0.600
GSPATT00020286001
M01965_2.00 		Paramecium tetraurelia
NNSGCGSBN
NVSCGCSNN		 PBM
Weirauch et al.(2014)
pTH5647 		0.600 0.600
estExt_gwp_GeneWisePlus.C_Chr_02.00010270
M01969_2.00 		Ostreococcus tauri
HRVGCGCCNN
NNGGCGCBYD		 PBM
Weirauch et al.(2014)
pTH5701 		0.554 0.554
efl-2
M01966_2.00 		Caenorhabditis elegans
NDBGCGSBNN
NNVSCGCVHN		 PBM
Weirauch et al.(2014)
pTH5916 		0.477 0.477
efl-2
M00662_2.00 		Caenorhabditis elegans
NSGCGSNNDN
NHNNSCGCSN		 PBM
Narasimhan et al.(2015)
pTH9173 		0.477 0.477
TVAG_062990
M01967_2.00 		Trichomonas vaginalis
NNSGCGSBNN
NNVSCGCSNN		 PBM
Weirauch et al.(2014)
pTH5727 		0.431 0.431
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_023990-R1 E2F 57 121

Links

Other E2F family TFs
Other Oryza longistaminata TFs

1049 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_192725 Agaricus bisporus AGABI2DRAFT_192725 I 0.000
BATDEDRAFT_27558 Batrachochytrium dendrobatidis BATDEDRAFT_27558 I 0.000
CERSUDRAFT_94820 Ceriporiopsis subvermispora CERSUDRAFT_94820 I 0.000
L804_00025 Cryptococcus gattii L804_00025 I 0.000
CNJ00280 Cryptococcus neoformans CNJ00280 I 0.000
EDEG_01594 Edhazardia aedis EDEG_01594 I 0.000
GLOTRDRAFT_92391 Gloeophyllum trabeum GLOTRDRAFT_92391 I 0.000
MELLADRAFT_35504 Melampsora laricipopulina MELLADRAFT_35504 I 0.000
MVLG_02963 Microbotryum violaceum MVLG_02963 I 0.000
MVLG_02993 Microbotryum violaceum MVLG_02993 I 0.000
DI09_11p240 Microsporidia sp DI09_11p240 N 0.000
E5Q_03771 Mixia osmundae E5Q_03771 I 0.000
ML319810a Mnemiopsis leidyi ML319810a N 0.000
fgeneshMC_pg.1_#_1279 Mucor circinelloides fgeneshMC_pg.1_#_1279 N 0.000
fgeneshMC_pg.2_#_8 Mucor circinelloides fgeneshMC_pg.2_#_8 I 0.000
fgeneshMC_pg.7_#_205 Mucor circinelloides fgeneshMC_pg.7_#_205 N 0.000
fgeneshMC_pg.7_#_41 Mucor circinelloides fgeneshMC_pg.7_#_41 I 0.000
gw1.5.922.1 Mucor circinelloides gw1.5.922.1 I 0.000
NEMVEDRAFT_v1g105595 Nematostella vectensis NEMVEDRAFT_v1g105595 D 0.000
NEMVEDRAFT_v1g92785 Nematostella vectensis NEMVEDRAFT_v1g92785 N 0.000
e_gw1.10.235.1 Phycomyces blakesleeanus e_gw1.10.235.1 I 0.000
gw1.2.930.1 Phycomyces blakesleeanus gw1.2.930.1 I 0.000
fgeneshPB_pg.11__229 Phycomyces blakesleeanus fgeneshPB_pg.11__229 N 0.000
PAN0_021c6005 Pseudozyma antarctica PAN0_021c6005 N 0.000
PSEUBRA_SCAF22g00024 Pseudozyma brasiliensis PSEUBRA_SCAF22g00024 N 0.000
PFL1_03213 Pseudozyma flocculosa PFL1_03213 I 0.000
PHSY_002545 Pseudozyma hubeiensis PHSY_002545 N 0.000
PTTG_03012 Puccinia triticina PTTG_03012 I 0.000
V565_070630 Rhizoctonia solani V565_070630 I 0.000
GLOINDRAFT_43985 Rhizophagus irregularis GLOINDRAFT_43985 I 0.000
GLOINDRAFT_235135 Rhizophagus irregularis GLOINDRAFT_235135 N 0.000
RO3G_11930 Rhizopus oryzae RO3G_11930 I 0.000
RO3G_04843 Rhizopus oryzae RO3G_04843 I 0.000
RO3G_12689 Rhizopus oryzae RO3G_12689 I 0.000
RO3G_13360 Rhizopus oryzae RO3G_13360 I 0.000
RO3G_04153 Rhizopus oryzae RO3G_04153 I 0.000
RO3G_16164 Rhizopus oryzae RO3G_16164 N 0.000
RHTO_06229 Rhodosporidium toruloides RHTO_06229 I 0.000
RTG_01934 Rhodotorula glutinis RTG_01934 I 0.000
SCHCODRAFT_257987 Schizophyllum commune SCHCODRAFT_257987 I 0.000
SPPG_01974 Spizellomyces punctatus SPPG_01974 N 0.000
SPPG_05154 Spizellomyces punctatus SPPG_05154 N 0.000
SPPG_07013 Spizellomyces punctatus SPPG_07013 N 0.000
sr13171 Sporisorium reilianum sr13171 N 0.000
estExt_fgenesh1_pg.C_10219 Sporobolomyces roseus estExt_fgenesh1_pg.C_10219 I 0.000
VSX2 Sus scrofa ENSSSCG00000002363 I 0.000
UHOR_03270 Ustilago hordei UHOR_03270 N 0.000
UM06283 Ustilago maydis UM06283 N 0.000