D917_06660 (Trichinella nativa)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) D917_06660 T174916_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.788 0.788
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.765 0.765
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.761 0.761
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.761 0.761
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.761 0.761
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.748 0.748
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.748 0.748
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.743 0.743
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_06660 EBF1 29 254

Links

Other EBF1 family TFs
Other Trichinella nativa TFs

314 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_25077 Aegilops tauschii F775_25077 I
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I
Aquca_023_00151 Aquilegia coerulea Aquca_023_00151 I
BRADI2G24120 Brachypodium distachyon BRADI2G24120 I
BRADI2G56096 Brachypodium distachyon BRADI2G56096 I
Ciclev10002059m.g Citrus clementina Ciclev10002059m.g I
orange1.1g025985m.g Citrus sinensis orange1.1g025985m.g I
Cucsa.184670 Cucumis sativus Cucsa.184670 I
Cucsa.363740 Cucumis sativus Cucsa.363740 I
MLOC_64571 Hordeum vulgare MLOC_64571 I
MLOC_53321 Hordeum vulgare MLOC_53321 I
LPERR05G14180 Leersia perrieri LPERR05G14180 I
LPERR01G33060 Leersia perrieri LPERR01G33060 I
cassava12750.valid.m1 Manihot esculenta cassava12750.valid.m1 I
MTR_4g094390 Medicago truncatula MTR_4g094390 I
mgf015540m Mimulus guttatus mgf015540m I
GSMUA_Achr10G10440_001 Musa acuminata GSMUA_Achr10G10440_001 I
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I
OBART05G17920 Oryza barthii OBART05G17920 I
OBART01G38510 Oryza barthii OBART01G38510 I
OBART01G37980 Oryza barthii OBART01G37980 I
OB05G25740 Oryza brachyantha OB05G25740 I
ORGLA05G0154900 Oryza glaberrima ORGLA05G0154900 I
ORGLA01G0323500 Oryza glaberrima ORGLA01G0323500 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OGLUM01G42750 Oryza glumaepatula OGLUM01G42750 I
OGLUM05G18920 Oryza glumaepatula OGLUM05G18920 I
BGIOSGA000430 Oryza indica BGIOSGA000430 I
BGIOSGA019930 Oryza indica BGIOSGA019930 I
OLONG_006755 Oryza longistaminata OLONG_006755 I
OMERI01G35430 Oryza meridionalis OMERI01G35430 I
OMERI05G15500 Oryza meridionalis OMERI05G15500 I
ONIVA05G18780 Oryza nivara ONIVA05G18780 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
ONIVA01G43200 Oryza nivara ONIVA01G43200 I
OPUNC01G37310 Oryza punctata OPUNC01G37310 I
OPUNC05G15820 Oryza punctata OPUNC05G15820 I
ORUFI01G41890 Oryza rufipogon ORUFI01G41890 I
ORUFI05G19090 Oryza rufipogon ORUFI05G19090 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
OS05G0437700 Oryza sativa OS05G0437700 I
OS01G0867300 Oryza sativa OS01G0867300 I
LOC_Os05g36160 Oryza sativa LOC_Os05g36160 D
Pavir.J36143 Panicum virgatum Pavir.J36143 I
Pavir.J06257 Panicum virgatum Pavir.J06257 I
Pavir.J05659 Panicum virgatum Pavir.J05659 I
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I
POPTR_0002s06800 Populus trichocarpa POPTR_0002s06800 I
POPTR_0005s21500 Populus trichocarpa POPTR_0005s21500 I
Pm022545 Prunus mume Pm022545 I
SapurV1A.5129s0010 Salix purpurea SapurV1A.5129s0010 I
SapurV1A.0625s0150 Salix purpurea SapurV1A.0625s0150 I
SapurV1A.0134s0060 Salix purpurea SapurV1A.0134s0060 I
Si003247m.g Setaria italica Si003247m.g I
Solyc04g071510.2 Solanum lycopersicum Solyc04g071510.2 I
Sb09g021580 Sorghum bicolor Sb09g021580 I
Sb03g040970 Sorghum bicolor Sb03g040970 I
TCM_035623 Theobroma cacao TCM_035623 N
TRAES3BF019000220CFD_g Triticum aestivum TRAES3BF019000220CFD_g I
TRIUR3_19588 Triticum urartu TRIUR3_19588 I
GRMZM2G132868 Zea mays GRMZM2G132868 I
GRMZM5G858197 Zea mays GRMZM5G858197 I