Pavir.J36143 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.J36143 T072496_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.787 0.492
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.787 0.492
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.787 0.492
LOC_Os05g36160
M01825_2.00 		Oryza sativa
MCACGTGK
MCACGTGK		 PBM
Weirauch et al.(2014)
pTH8599 		0.784 0.667
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J36143.1.p bZIP 59 121

Links

Other bZIP family TFs
Other Panicum virgatum TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G132868 Zea mays GRMZM2G132868 I 0.875
Pavir.J06257 Panicum virgatum Pavir.J06257 I 0.875
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I 0.829
GSMUA_Achr10G10440_001 Musa acuminata GSMUA_Achr10G10440_001 I 0.822
POPTR_0002s06800 Populus trichocarpa POPTR_0002s06800 I 0.819
POPTR_0005s21500 Populus trichocarpa POPTR_0005s21500 I 0.819
Sb09g021580 Sorghum bicolor Sb09g021580 I 0.819
SapurV1A.0134s0060 Salix purpurea SapurV1A.0134s0060 I 0.819
SapurV1A.0625s0150 Salix purpurea SapurV1A.0625s0150 I 0.819
Bo5g004230 Brassica oleracea Bo5g004230 N 0.815
Bra015281 Brassica rapa Bra015281 N 0.815
Thhalv10009710m.g Eutrema salsugineum Thhalv10009710m.g N 0.815
GRMZM5G858197 Zea mays GRMZM5G858197 I 0.813
Sb03g040970 Sorghum bicolor Sb03g040970 I 0.813
Si003247m.g Setaria italica Si003247m.g I 0.813
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I 0.813
GLYMA10G36820 Glycine max GLYMA10G36820 N 0.812
MTR_1g098590 Medicago truncatula MTR_1g098590 N 0.812
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N 0.811
MDP0000208334 Malus domestica MDP0000208334 N 0.807
GLYMA08G08220 Glycine max GLYMA08G08220 N 0.805
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I 0.805
TRIUR3_19588 Triticum urartu TRIUR3_19588 I 0.803
Lus10028575.g Linum usitatissimum Lus10028575.g N 0.802
mgf009464m Mimulus guttatus mgf009464m N 0.801
GBF4 Arabidopsis thaliana AT1G03970 N 0.799
fgenesh2_kg.1__328__AT1G03970.1 Arabidopsis lyrata fgenesh2_kg.1__328__AT1G03970.1 N 0.799
Cagra.1671s0014 Capsella grandiflora Cagra.1671s0014 N 0.799
Carubv10011573m.g Capsella rubella Carubv10011573m.g N 0.799
BRADI2G24120 Brachypodium distachyon BRADI2G24120 I 0.798
F775_25077 Aegilops tauschii F775_25077 I 0.798
MLOC_53321 Hordeum vulgare MLOC_53321 I 0.798
Si017618m.g Setaria italica Si017618m.g I 0.798
Pavir.J05659 Panicum virgatum Pavir.J05659 I 0.798
GLYMA05G25200 Glycine max GLYMA05G25200 I 0.797
GRMZM2G129247 Zea mays GRMZM2G129247 N 0.797
TCM_006432 Theobroma cacao TCM_006432 I 0.797
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I 0.797
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I 0.797
MDP0000706379 Malus domestica MDP0000706379 I 0.797
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.796
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.795
Bo7g067030 Brassica oleracea Bo7g067030 N 0.795
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.795
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.795
OB01G46760 Oryza brachyantha OB01G46760 I 0.795
OBART01G37980 Oryza barthii OBART01G37980 I 0.795
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.795
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.795
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.795
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.795
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.795
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.795
OS01G0859300 Oryza sativa OS01G0859300 I 0.795
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.795
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.795
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.794
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.793
F775_32479 Aegilops tauschii F775_32479 I 0.793
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.793
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.793
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.793
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.792
TCM_033824 Theobroma cacao TCM_033824 I 0.792
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.792
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.792
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.791
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.791
MLOC_64571 Hordeum vulgare MLOC_64571 I 0.790
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.790
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I 0.790
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.790
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.790
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I 0.790
30170.m013868 Ricinus communis 30170.m013868 I 0.790
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.790
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.790
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.790
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.790
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.790
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.789
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.789
Bostr.26675s0358 Boechera stricta Bostr.26675s0358 N 0.789
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.788
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.788
Si030114m.g Setaria italica Si030114m.g I 0.788
Ca_01548 Cicer arietinum Ca_01548 I 0.788
Thhalv10003246m.g Eutrema salsugineum Thhalv10003246m.g N 0.788
ABF4 Arabidopsis thaliana AT3G19290 D 0.787
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.787
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.787
OB05G25740 Oryza brachyantha OB05G25740 I 0.787
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.787
Si006889m.g Setaria italica Si006889m.g I 0.787
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.787
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.787
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.787
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.787
mgf020824m Mimulus guttatus mgf020824m I 0.786
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.786
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.785
gene11837-v1.0-hybrid Fragaria vesca gene11837-v1.0-hybrid N 0.785
chr5.CM0052.120.nc Lotus japonicus chr5.CM0052.120.nc N 0.785
Bo5g115300 Brassica oleracea Bo5g115300 I 0.784
Bra022409 Brassica rapa Bra022409 I 0.784
Bra037533 Brassica rapa Bra037533 I 0.784
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.784
LOC_Os05g36160 Oryza sativa LOC_Os05g36160 D 0.784
LPERR05G14180 Leersia perrieri LPERR05G14180 I 0.784
OBART05G17920 Oryza barthii OBART05G17920 I 0.784
OGLUM05G18920 Oryza glumaepatula OGLUM05G18920 I 0.784
OMERI05G15500 Oryza meridionalis OMERI05G15500 I 0.784
ONIVA05G18780 Oryza nivara ONIVA05G18780 I 0.784
ORGLA05G0154900 Oryza glaberrima ORGLA05G0154900 I 0.784
ORUFI05G19090 Oryza rufipogon ORUFI05G19090 I 0.784
Cla016272 Citrullus lanatus Cla016272 I 0.784
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.784
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.784
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.784
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.784
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.784
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.783
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.783
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.782
PK02169.1 Cannabis sativa PK02169.1 I 0.782