Carubv10013729m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10013729m.g T071569_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.819 0.806
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.819 0.806
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.819 0.806
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.839 0.758
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.808 0.710
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.822 0.758
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.808 0.710
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.822 0.758
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.802 0.629
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.822 0.758
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.784 0.645
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.822 0.758
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.784 0.645
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.822 0.758
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.822 0.758
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013729m bZIP 357 420
Carubv10013736m bZIP 357 419

Links

Other bZIP family TFs
Other Capsella rubella TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.875
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.875
ABF4 Arabidopsis thaliana AT3G19290 D 0.868
Bo5g115300 Brassica oleracea Bo5g115300 I 0.862
Bra022409 Brassica rapa Bra022409 I 0.862
Bra037533 Brassica rapa Bra037533 I 0.862
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.862
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.862
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.846
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.846
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.846
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.845
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.844
Si030114m.g Setaria italica Si030114m.g I 0.842
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.840
PK18009.1 Cannabis sativa PK18009.1 D 0.839
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.837
TCM_007074 Theobroma cacao TCM_007074 I 0.834
mgf002047m Mimulus guttatus mgf002047m I 0.834
mgf007524m Mimulus guttatus mgf007524m I 0.834
mgf014602m Mimulus guttatus mgf014602m I 0.834
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.834
MDP0000248567 Malus domestica MDP0000248567 I 0.834
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.833
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.833
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.833
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.832
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.832
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.831
Pm021430 Prunus mume Pm021430 I 0.831
TCM_033824 Theobroma cacao TCM_033824 I 0.830
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.830
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.828
Bo1g114840 Brassica oleracea Bo1g114840 I 0.828
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.826
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.826
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.826
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.826
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.826
Ca_01548 Cicer arietinum Ca_01548 I 0.826
Cla016272 Citrullus lanatus Cla016272 I 0.826
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.826
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.826
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.826
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.826
ABF3 Arabidopsis thaliana AT4G34000 D 0.825
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.825
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.825
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.825
Si013904m.g Setaria italica Si013904m.g I 0.825
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.825
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.824
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.824
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.824
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.824
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.824
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.824
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.824
OS09G0456200 Oryza sativa OS09G0456200 I 0.824
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.824
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.824
30170.m013868 Ricinus communis 30170.m013868 I 0.824
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.824
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.824
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.824
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.824
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.824
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.824
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.823
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.823
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.823
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.823
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.823
ABF1 Arabidopsis thaliana AT1G49720 D 0.822
OBART08G17810 Oryza barthii OBART08G17810 I 0.822
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.822
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.822
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.821
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.821
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.821
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.821
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.821
PK02169.1 Cannabis sativa PK02169.1 I 0.821
Bo3g073080 Brassica oleracea Bo3g073080 I 0.820
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.820
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.820
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.820
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.820
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.819
mgf020824m Mimulus guttatus mgf020824m I 0.818
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.818
Bo1g007700 Brassica oleracea Bo1g007700 I 0.817
F775_32479 Aegilops tauschii F775_32479 I 0.817
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.817
OB08G24950 Oryza brachyantha OB08G24950 I 0.817
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.817
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.817
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.817
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.816
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.816
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.815
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.815
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.815
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.815
OB01G46760 Oryza brachyantha OB01G46760 I 0.815
OBART01G37980 Oryza barthii OBART01G37980 I 0.815
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.815
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.815
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.815
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.815
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.815
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.815
OS01G0859300 Oryza sativa OS01G0859300 I 0.815
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.815
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.815
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.815
Bra018800 Brassica rapa Bra018800 I 0.814
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.814
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.814
Aquca_007_00660 Aquilegia coerulea Aquca_007_00660 I 0.814
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.814
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.813
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.813
29801.m003176 Ricinus communis 29801.m003176 I 0.813
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.813
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.813
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.813
MDP0000296303 Malus domestica MDP0000296303 I 0.813
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.812
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.812
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.812
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.811
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.811
Cla022926 Citrullus lanatus Cla022926 I 0.810
29625.m000702 Ricinus communis 29625.m000702 I 0.810
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.810
OS03G0322700 Oryza sativa OS03G0322700 I 0.809
ABF2 Arabidopsis thaliana AT1G45249 D 0.808
Bo6g006970 Brassica oleracea Bo6g006970 I 0.808
Bra040260 Brassica rapa Bra040260 I 0.808
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.808
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.808
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.808
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.808
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.808
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.808
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.808
Bo7g116570 Brassica oleracea Bo7g116570 I 0.807
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.807
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.806
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.806
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.806
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.806
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.806
MDP0000701734 Malus domestica MDP0000701734 I 0.806
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.805
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.804
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.804
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.804
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.804
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.804
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.804
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.803
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.803
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.803
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.803
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.803
BZIP23 Oryza sativa OS02G0766700 I 0.803
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.803
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.802
OB09G19140 Oryza brachyantha OB09G19140 I 0.802
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.802
OS08G0471950 Oryza sativa OS08G0471950 D 0.802
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.802
cassava17300.m1 Manihot esculenta cassava17300.m1 I 0.802
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.800
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.800
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.800
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.800
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.800
Ca_06458 Cicer arietinum Ca_06458 I 0.800
Pm001315 Prunus mume Pm001315 I 0.800
Bra011485 Brassica rapa Bra011485 I 0.799
OPUNC01G36800 Oryza punctata OPUNC01G36800 I 0.799
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.798
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.798
Bo6g018480 Brassica oleracea Bo6g018480 I 0.798
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.798
OB06G16510 Oryza brachyantha OB06G16510 I 0.798
OBART06G07070 Oryza barthii OBART06G07070 I 0.798
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.798
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.798
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.798
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.798
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.798
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.797
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.796
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.796
Si017618m.g Setaria italica Si017618m.g I 0.796
Pm005288 Prunus mume Pm005288 I 0.796
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.796
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.795
GLYMA02G14880 Glycine max GLYMA02G14880 N 0.793
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.793
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.793
mgf002176m Mimulus guttatus mgf002176m I 0.793
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.792
Si006889m.g Setaria italica Si006889m.g I 0.792
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.792
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.792
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.792
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.792
ABI5 Arabidopsis thaliana AT2G36270 D 0.791
OBART02G33770 Oryza barthii OBART02G33770 I 0.791
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.791
Ca_00791 Cicer arietinum Ca_00791 I 0.791
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.791
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.791
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.791
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.790
30055.m001548 Ricinus communis 30055.m001548 I 0.789
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.789
GLYMA10G08370 Glycine max GLYMA10G08370 I 0.788
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.788
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.788
F775_19301 Aegilops tauschii F775_19301 I 0.787
GRMZM2G132868 Zea mays GRMZM2G132868 I 0.787
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.787
Si001731m.g Setaria italica Si001731m.g I 0.787
Traes_3DL_E21790878 Triticum aestivum Traes_3DL_E21790878 I 0.787
mgf015092m Mimulus guttatus mgf015092m I 0.787
Pavir.J06257 Panicum virgatum Pavir.J06257 I 0.787
Pavir.J36143 Panicum virgatum Pavir.J36143 I 0.787
POPTR_0002s09140 Populus trichocarpa POPTR_0002s09140 I 0.786
Solyc09g009490.2 Solanum lycopersicum Solyc09g009490.2 I 0.786
TCM_034992 Theobroma cacao TCM_034992 I 0.786
DPBF2 Vitis vinifera VIT_06s0080g00340 I 0.786
Lus10006489.g Linum usitatissimum Lus10006489.g I 0.786
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N 0.785
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I 0.785
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I 0.785
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I 0.785
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.784
OB02G40680 Oryza brachyantha OB02G40680 I 0.784
GSMUA_Achr2G20490_001 Musa acuminata GSMUA_Achr2G20490_001 I 0.783
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.783
OPUNC05G18710 Oryza punctata OPUNC05G18710 I 0.783
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I 0.783
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I 0.783
TCM_022574 Theobroma cacao TCM_022574 I 0.783
VIT_18s0001g04500 Vitis vinifera VIT_18s0001g04500 I 0.783
29908.m005963 Ricinus communis 29908.m005963 N 0.783
Gorai.002G240500 Gossypium raimondii Gorai.002G240500 I 0.783
GLYMA19G37910 Glycine max GLYMA19G37910 I 0.782
chr1.CM0010.310.nd Lotus japonicus chr1.CM0010.310.nd I 0.782