Carubv10009399m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10009399m.g T071560_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.803 0.790
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.803 0.790
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.803 0.790
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.803 0.790
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.803 0.790
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.803 0.790
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.797 0.661
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.797 0.661
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.797 0.629
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.797 0.629
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.791 0.629
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.790 0.629
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.782 0.677
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.782 0.677
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.782 0.677
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009399m bZIP 308 370

Links

Other bZIP family TFs
Other Capsella rubella TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.861
Bra018800 Brassica rapa Bra018800 I 0.841
Bo6g018480 Brassica oleracea Bo6g018480 I 0.829
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.829
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.829
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.828
ABF3 Arabidopsis thaliana AT4G34000 D 0.824
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.822
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.820
ABF1 Arabidopsis thaliana AT1G49720 D 0.817
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.816
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.816
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.815
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.815
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.813
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.813
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.813
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.813
Bo3g073080 Brassica oleracea Bo3g073080 I 0.812
ABF4 Arabidopsis thaliana AT3G19290 D 0.811
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.810
OBART08G17810 Oryza barthii OBART08G17810 I 0.810
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.807
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.807
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.807
OB06G16510 Oryza brachyantha OB06G16510 I 0.807
OBART06G07070 Oryza barthii OBART06G07070 I 0.807
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.807
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.807
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.807
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.807
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.807
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.807
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.807
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.807
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.806
Si013904m.g Setaria italica Si013904m.g I 0.806
Si030114m.g Setaria italica Si030114m.g I 0.806
29801.m003176 Ricinus communis 29801.m003176 I 0.806
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.806
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.806
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.806
Bo1g114840 Brassica oleracea Bo1g114840 I 0.805
OB09G19140 Oryza brachyantha OB09G19140 I 0.804
mgf015092m Mimulus guttatus mgf015092m I 0.804
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.803
OBART01G37980 Oryza barthii OBART01G37980 I 0.802
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.802
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.802
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.802
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.802
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.801
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.801
Ca_06458 Cicer arietinum Ca_06458 I 0.801
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.800
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.800
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.800
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.799
OBART02G33770 Oryza barthii OBART02G33770 I 0.799
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.799
Si001731m.g Setaria italica Si001731m.g I 0.799
Cla022926 Citrullus lanatus Cla022926 I 0.799
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.799
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.799
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.798
ABF2 Arabidopsis thaliana AT1G45249 D 0.797
ABI5 Arabidopsis thaliana AT2G36270 D 0.797
Bo6g006970 Brassica oleracea Bo6g006970 I 0.797
Bra040260 Brassica rapa Bra040260 I 0.797
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.797
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.797
GLYMA02G14880 Glycine max GLYMA02G14880 N 0.797
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.797
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.797
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.797
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.797
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.797
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.797
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.797
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.797
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.797
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.797
TCM_007074 Theobroma cacao TCM_007074 I 0.796
MDP0000248567 Malus domestica MDP0000248567 I 0.796
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.796
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.795
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.795
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.795
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.795
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.795
OS09G0456200 Oryza sativa OS09G0456200 I 0.795
Pm005288 Prunus mume Pm005288 I 0.795
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.794
OS03G0322700 Oryza sativa OS03G0322700 I 0.794
TCM_022574 Theobroma cacao TCM_022574 I 0.793
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.792
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.791
PK18009.1 Cannabis sativa PK18009.1 D 0.791
OS08G0471950 Oryza sativa OS08G0471950 D 0.790
Aquca_007_00660 Aquilegia coerulea Aquca_007_00660 I 0.790
Bo7g116570 Brassica oleracea Bo7g116570 I 0.789
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.789
Pm021430 Prunus mume Pm021430 I 0.789
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.789
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.789
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.789
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.789
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.788
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.788
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.788
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.788
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.787
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.787
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.787
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I 0.786
mgf002047m Mimulus guttatus mgf002047m I 0.786
mgf007524m Mimulus guttatus mgf007524m I 0.786
mgf014602m Mimulus guttatus mgf014602m I 0.786
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.786
Bra011485 Brassica rapa Bra011485 I 0.785
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.785
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.785
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.785
PK02169.1 Cannabis sativa PK02169.1 I 0.785
OB02G40680 Oryza brachyantha OB02G40680 I 0.784
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.784
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.784
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.784
30055.m001548 Ricinus communis 30055.m001548 I 0.784
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.784
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.784
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.783
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.783
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.783
Cla016272 Citrullus lanatus Cla016272 I 0.783
Cla017970 Citrullus lanatus Cla017970 I 0.783
30170.m013868 Ricinus communis 30170.m013868 I 0.783
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.783
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.783
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.783
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.783
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.782
Bo1g007700 Brassica oleracea Bo1g007700 I 0.782
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.782
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.782
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.782
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.782
MDP0000296303 Malus domestica MDP0000296303 I 0.782
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.782
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.782