Pavir.Fa00674 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Fa00674 T072390_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.833 0.817
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.826 0.800
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.826 0.800
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.826 0.800
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.820 0.667
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.820 0.667
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.818 0.683
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.818 0.683
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.818 0.683
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.818 0.683
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.818 0.683
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.818 0.683
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.808 0.833
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.808 0.833
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.801 0.750
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00674.1.p bZIP 223 282
Pavir.Fa00674.2.p bZIP 223 282

Links

Other bZIP family TFs
Other Panicum virgatum TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si013904m.g Setaria italica Si013904m.g I 0.856
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.854
Cla016272 Citrullus lanatus Cla016272 I 0.850
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.850
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.849
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.849
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.849
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.849
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.849
OS09G0456200 Oryza sativa OS09G0456200 I 0.849
mgf002047m Mimulus guttatus mgf002047m I 0.847
mgf007524m Mimulus guttatus mgf007524m I 0.847
mgf014602m Mimulus guttatus mgf014602m I 0.847
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.845
Pm021430 Prunus mume Pm021430 I 0.845
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.845
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.844
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.842
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.841
PK02169.1 Cannabis sativa PK02169.1 I 0.841
Si030114m.g Setaria italica Si030114m.g I 0.840
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.840
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.840
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.839
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.839
TCM_033824 Theobroma cacao TCM_033824 I 0.839
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.839
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.839
TCM_007074 Theobroma cacao TCM_007074 I 0.838
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.838
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.838
MDP0000248567 Malus domestica MDP0000248567 I 0.838
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.838
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.838
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.837
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.837
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.837
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.837
30170.m013868 Ricinus communis 30170.m013868 I 0.837
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.837
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.837
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.837
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.837
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.837
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.836
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.835
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.835
Ca_01548 Cicer arietinum Ca_01548 I 0.835
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.835
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.835
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.834
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.834
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.834
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.834
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.834
BZIP23 Oryza sativa OS02G0766700 I 0.834
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.833
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.833
PK18009.1 Cannabis sativa PK18009.1 D 0.833
Bo5g115300 Brassica oleracea Bo5g115300 I 0.831
Bra022409 Brassica rapa Bra022409 I 0.831
Bra037533 Brassica rapa Bra037533 I 0.831
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.831
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.831
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.831
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.830
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.830
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.830
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.830
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.829
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.829
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.829
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.827
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.827
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.827
ABF4 Arabidopsis thaliana AT3G19290 D 0.826
Bo3g073080 Brassica oleracea Bo3g073080 I 0.826
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.826
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.826
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.826
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.826
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.826
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.826
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.826
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.825
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.824
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.824
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.823
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.822
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.822
ABF3 Arabidopsis thaliana AT4G34000 D 0.820
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.820
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.820
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.820
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.820
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.820
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.819
OB09G19140 Oryza brachyantha OB09G19140 I 0.819
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.819
ABF1 Arabidopsis thaliana AT1G49720 D 0.818
OB08G24950 Oryza brachyantha OB08G24950 I 0.818
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.818
Cla022926 Citrullus lanatus Cla022926 I 0.818
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.818
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.818
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.817
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.815
OBART02G33770 Oryza barthii OBART02G33770 I 0.815
29801.m003176 Ricinus communis 29801.m003176 I 0.815
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.815
mgf020824m Mimulus guttatus mgf020824m I 0.813
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.813
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.809
Bo7g116570 Brassica oleracea Bo7g116570 I 0.809
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.809
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.809
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.809
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.809
ABF2 Arabidopsis thaliana AT1G45249 D 0.808
Bo6g006970 Brassica oleracea Bo6g006970 I 0.808
Bra040260 Brassica rapa Bra040260 I 0.808
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.808
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.808
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.808
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.808
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.806
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.805
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.805
Bo1g007700 Brassica oleracea Bo1g007700 I 0.804
Pm005288 Prunus mume Pm005288 I 0.804
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.803
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.803
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.803
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.803
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.803
MDP0000296303 Malus domestica MDP0000296303 I 0.803
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.803
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.803
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.802
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.802
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.802
Bo1g114840 Brassica oleracea Bo1g114840 I 0.801
OS08G0471950 Oryza sativa OS08G0471950 D 0.801
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.800
OB02G40680 Oryza brachyantha OB02G40680 I 0.800
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.800
Lus10006489.g Linum usitatissimum Lus10006489.g I 0.800
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.800
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.799
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.799
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.799
OB01G46760 Oryza brachyantha OB01G46760 I 0.799
OBART01G37980 Oryza barthii OBART01G37980 I 0.799
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.799
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.799
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.799
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.799
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.799
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.799
OS01G0859300 Oryza sativa OS01G0859300 I 0.799
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.798
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.798
Si017618m.g Setaria italica Si017618m.g I 0.798
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.798
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.798
Bo6g018480 Brassica oleracea Bo6g018480 I 0.797
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.797
F775_32479 Aegilops tauschii F775_32479 I 0.797
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.797
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.797
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.797
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.797
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.797
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.796
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.796
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.796
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.796
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.796
Bra018800 Brassica rapa Bra018800 I 0.795
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.795
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.795
ABI5 Arabidopsis thaliana AT2G36270 D 0.794
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.794
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.794
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.794
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.794
Ca_06458 Cicer arietinum Ca_06458 I 0.794
30055.m001548 Ricinus communis 30055.m001548 I 0.794
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.793
29625.m000702 Ricinus communis 29625.m000702 I 0.792
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.792
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.792
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.790
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.789
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.788
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.788
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.788
Si006889m.g Setaria italica Si006889m.g I 0.788
TCM_022574 Theobroma cacao TCM_022574 I 0.788
Ca_00791 Cicer arietinum Ca_00791 I 0.788
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.788
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.788
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.788
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.787
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.787
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.787
OB06G16510 Oryza brachyantha OB06G16510 I 0.787
OBART06G07070 Oryza barthii OBART06G07070 I 0.787
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.787
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.787
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.787
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.787
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.787
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.787
BZIP46 Oryza sativa OS06G0211200 I 0.787
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.787
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.787
mgf002176m Mimulus guttatus mgf002176m I 0.787
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.785
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.785
MDP0000701734 Malus domestica MDP0000701734 I 0.784
Bra011485 Brassica rapa Bra011485 I 0.783
OPUNC01G36800 Oryza punctata OPUNC01G36800 I 0.783
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.783
Sb10g007090 Sorghum bicolor Sb10g007090 I 0.783
OBART08G17810 Oryza barthii OBART08G17810 I 0.782
DPBF2 Vitis vinifera VIT_06s0080g00340 I 0.782