genemark-nMf.1.1.scaf01112-processed-gene-0.4 (Meloidogyne floridensis)
Ets

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00178 (Ets) IPR000418 genemark-nMf.1.1.scaf01112-processed-gene-0.4 T178479_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPDEF
M02973_2.00 		Homo sapiens
AMCCGGATRTD
HAYATCCGGKT		 SELEX
Jolma et al.(2013)
SPDEF_1 		0.893 0.667
SPDEF
M02974_2.00 		Homo sapiens
ATRATCCGGGAMMHY
RDKKTCCCGGATYAT		 SELEX
Jolma et al.(2013)
SPDEF_2 		0.893 0.667
SPDEF
M02975_2.00 		Homo sapiens
RCAGDAAGAAGTAWWM
KWWTACTTCTTHCTGY		 SELEX
Jolma et al.(2013)
SPDEF_3 		0.893 0.667
SPDEF
M02976_2.00 		Homo sapiens
AMCCGGATRTD
HAYATCCGGKT		 SELEX
Jolma et al.(2013)
SPDEF_4 		0.893 0.667
SPDEF
M02977_2.00 		Homo sapiens
WTRATCCGGGACCMC
GKGGTCCCGGATYAW		 SELEX
Jolma et al.(2013)
SPDEF_5 		0.893 0.667
SPDEF
M02978_2.00 		Homo sapiens
RCAGDAAGAMGTAWHM
KDWTACKTCTTHCTGY		 SELEX
Jolma et al.(2013)
SPDEF_6 		0.893 0.667
SPDEF
M04748_2.00 		Homo sapiens
NWVCCGGATRYN
NRYATCCGGBWN		 SELEX
Yin et al.(2017)
SPDEF_eDBD_HT-SELEX 		0.893 0.667
SPDEF
M04750_2.00 		Homo sapiens
NWVCCGGATRYN
NRYATCCGGBWN		 SELEX
Yin et al.(2017)
SPDEF_FL_HT-SELEX 		0.893 0.667
SPDEF
M09530_2.00 		Homo sapiens
WVCMGGAWVY
RBWTCCKGBW		 Misc
Heinz et al.(2010)
VCaP-SPDEF_SRA014231 		0.893 0.667
SPDEF
M04749_2.00 		Homo sapiens
NAVCMGGATRYD
HRYATCCKGBTN		 SELEX
Yin et al.(2017)
SPDEF_eDBD_Methyl-HT-SELEX 		0.893 0.667
SPDEF
M04751_2.00 		Homo sapiens
NAVCMGKATRYD
HRYATMCKGBTN		 SELEX
Yin et al.(2017)
SPDEF_FL_Methyl-HT-SELEX 		0.893 0.667
Spdef
M00159_2.00 		Mus musculus
NNVMGGAHNN
NNDTCCKBNN		 PBM
Badis et al.(2009)
Spdef_0905 		0.878 0.654
Spdef
M01488_2.00 		Mus musculus
NDNVMGGAHN
NDTCCKBNHN		 PBM
Wei et al.(2010)
Spdef 		0.878 0.654
Ets98B
M03727_2.00 		Drosophila melanogaster
TAMCGGATGCN
NGCATCCGKTA		 SELEX
Nitta et al.(2015)
Ets98B_1 		0.856 0.617
Ets98B
M03728_2.00 		Drosophila melanogaster
TKGCGGATGCN
NGCATCCGCMA		 SELEX
Nitta et al.(2015)
Ets98B_2 		0.856 0.617
Ets98B
M03729_2.00 		Drosophila melanogaster
ATGATCCGGGACN
NGTCCCGGATCAT		 SELEX
Nitta et al.(2015)
Ets98B_3 		0.856 0.617
Ets98B
M03730_2.00 		Drosophila melanogaster
GSATMCGKTA
TAMCGKATSC		 SELEX
Nitta et al.(2015)
Ets98B_4 		0.856 0.617
Ets98B
M03731_2.00 		Drosophila melanogaster
ATGATCCGGGASN
NSTCCCGGATCAT		 SELEX
Nitta et al.(2015)
Ets98B_5 		0.856 0.617
Ets98B
M06191_2.00 		Drosophila melanogaster
ASCCGGAWC
GWTCCGGST		 B1H
Zhu et al.(2011)
Ets98B_SANGER_10_FBgn0005659 		0.856 0.617
For this family, TFs with SR scores > 0.717 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
genemark-nMf.1.1.scaf01112-processed-gene-0.4-mRNA-1 Ets 584 666

Links

Other Ets family TFs
Other Meloidogyne floridensis TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action