CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava31125.valid.m1 *(Manihot esculenta)* FAR1
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03101 (FAR1)	IPR004330	cassava31125.valid.m1	T181045_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FHY3 M08114_2.00	Arabidopsis thaliana	NHCACGCGCTNN	NNAGCGCGTGDN	ChIP-seq Mathelier et al.(2014) MA0557.1	0.900	0.900
FHY3 M09540_2.00	Arabidopsis thaliana	NHSACGCGCBNN	NNVGCGCGTSDN	Misc Heinz et al.(2010) Arabidopsis-FHY3_GSE30711	0.900	0.900
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
cassava31125.valid.m1	FAR1	85	187	SFYQEYARSTGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDPENGTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLP

Links
Other FAR1 family TFs
Other *Manihot esculenta* TFs