CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

LDEC021031 *(Leptinotarsa decemlineata)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	LDEC021031	T189567_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fd96Ca M03743_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fd96Ca_1	0.916	0.930
Foxb1 M01983_2.00	Mus musculus	TRTTKAYWYW	WRWRTMAAYA	PBM Weirauch et al.(2014) pTH2808	0.908	0.860
FOXB1 M03028_2.00	Homo sapiens	GAATGACACRGCKV	BMGCYGTGTCATTC	SELEX Jolma et al.(2013) FOXB1_1	0.908	0.860
FOXB1 M03029_2.00	Homo sapiens	WRWGTMAATATTKACWYW	WRWGTMAATATTKACWYW	SELEX Jolma et al.(2013) FOXB1_2	0.908	0.860
FOXB1 M03030_2.00	Homo sapiens	WTRTTKACWTW	WAWGTMAAYAW	SELEX Jolma et al.(2013) FOXB1_3	0.908	0.860
FOXB1 M03031_2.00	Homo sapiens	NTRTTTACW	WGTAAAYAN	SELEX Jolma et al.(2013) FOXB1_4	0.908	0.860
FOXB1 M04837_2.00	Homo sapiens	NWRDGYMAATATTKRCWYWD	HWRWGYMAATATTKRCHYWN	SELEX Yin et al.(2017) FOXB1_eDBD_HT-SELEX	0.908	0.860
FOXB1 M04838_2.00	Homo sapiens	NWRNGYMAATATTKRCDYWD	HWRHGYMAATATTKRCNYWN	SELEX Yin et al.(2017) FOXB1_eDBD_Methyl-HT-SELEX	0.908	0.860
lin-31 M00665_2.00	Caenorhabditis elegans	NWRTAAAYANN	NNTRTTTAYWN	PBM Narasimhan et al.(2015) pTH9116	0.799	0.791
fkh M03734_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fkh_1	0.707	0.698
fkh M03735_2.00	Drosophila melanogaster	HWASAATAAYAWT	AATRTTATTSTWD	SELEX Nitta et al.(2015) fkh_2	0.707	0.698
fkh M06473_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Mathelier et al.(2014) MA0446.1	0.707	0.698
fkh M06194_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Zhu et al.(2011) fkh_NAR_FBgn0000659	0.707	0.698
fkh M08200_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	ChIP-seq Contrino et al.(2012) Mf15	0.707	0.698
fkh M09668_2.00	Drosophila melanogaster	TRTTTRCAHAAG	CTTDTGYAAAYA	Misc Kulakovskiy et al.(2009) fkh	0.707	0.698
Foxa2 M00162_2.00	Mus musculus	GTAAAYAW	WTRTTTAC	PBM Badis et al.(2009) Foxa2_2830	0.699	0.686
FOXA2 M04815_2.00	Homo sapiens	NHVNRYMAATATTKACNNDN	NHNNGTMAATATTKRYNBDN	SELEX Yin et al.(2017) FOXA2_eDBD_HT-SELEX	0.699	0.686
Foxa2 M08121_2.00	Mus musculus	TRTTTACWYWDN	NHWRWGTAAAYA	ChIP-seq Mathelier et al.(2014) MA0047.2	0.699	0.686
FOXA2 M07959_2.00	Homo sapiens	NNWRWGYAAAYANNN	NNNTRTTTRCWYWNN	ChIP-seq Gerstein et al.(2012) HepG2_FOXA2_HudsonAlpha	0.699	0.686
FOXA2 M09088_2.00	Homo sapiens	NHWRWGTAAACA	TGTTTACWYWDN	Misc Kulakovskiy et al.(2013) FOXA2_HUMAN.H11MO.0.A	0.699	0.686
Foxa2 M09104_2.00	Mus musculus	BNHTRTTKACWYW	WRWGTMAAYADNV	Misc Kulakovskiy et al.(2013) FOXA2_MOUSE.H11MO.0.A	0.699	0.686
FOXA2 M09542_2.00	Homo sapiens	WVWGTMAACANV	BNTGTTKACWBW	Misc Heinz et al.(2010) Liver-Foxa2_GSE25694	0.699	0.686
FOXA2 M10540_2.00	Homo sapiens	WAARYAAAYADKNMV	BKNMHTRTTTRYTTW	Transfac Matys et al.(2006) V$HNF3B_01	0.699	0.686
FOXA2 M10541_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3B_Q6	0.699	0.686
AAA20679 M10575_2.00	Xenopus laevis	WNWGTMAACAWWMW	WKWWTGTTKACWNW	Transfac Matys et al.(2006) V$XFD3_01	0.699	0.686
FOXA2 M04816_2.00	Homo sapiens	NWRNRYMAATATTKACWNWN	NWNWGTMAATATTKRYNYWN	SELEX Yin et al.(2017) FOXA2_eDBD_Methyl-HT-SELEX	0.699	0.686
Q2L6N7_PELSI M01990_2.00	Trionyx sinensis	KTRTTTACA	TGTAAAYAM	PBM Weirauch et al.(2014) pTH5334	0.681	0.663
FOXA1 M04817_2.00	Homo sapiens	NTRTKTACMYWN	NWRKGTAMAYAN	SELEX Yin et al.(2017) FOXA1_eDBD_HT-SELEX	0.680	0.686
FOXA1 M04819_2.00	Homo sapiens	BVYTAWGTAAACAAWN	NWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_1	0.680	0.686
FOXA1 M04820_2.00	Homo sapiens	HWRWRYAAATATTKACWYWR	YWRWGTMAATATTTRYWYWD	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_2	0.680	0.686
FOXA1 M08117_2.00	Homo sapiens	NNNNTRTTTACWYWD	HWRWGTAAAYANNNN	ChIP-seq Mathelier et al.(2014) MA0148.3	0.680	0.686
FOXA1 M07960_2.00	Homo sapiens	NNYWRWGYAAACANN	NNTGTTTRCWYWRNN	ChIP-seq Gerstein et al.(2012) ECC-1_FOXA1_HudsonAlpha	0.680	0.686
FOXA1 M07961_2.00	Homo sapiens	HWRWGTAAAYA	TRTTTACWYWD	ChIP-seq Gerstein et al.(2012) HepG2_FOXA1_HudsonAlpha	0.680	0.686
FOXA1 M07962_2.00	Homo sapiens	NWVWGTAAACA	TGTTTACWBWN	ChIP-seq Gerstein et al.(2012) T-47D_FOXA1_HudsonAlpha	0.680	0.686
FOXA1 M08199_2.00	Homo sapiens	BWRDGTAAACANN	NNTGTTTACHYWV	ChIP-seq Contrino et al.(2012) Mv69	0.680	0.686
FOXA1 M08028_2.00	Homo sapiens	WRWRYAAAYA	TRTTTRYWYW	ChIP-seq Chen et al.(2011) GSE15244_FoxA1	0.680	0.686
FOXA1 M09090_2.00	Homo sapiens	VHWRWGTAAACA	TGTTTACWYWDB	Misc Kulakovskiy et al.(2013) FOXA1_HUMAN.H11MO.0.A	0.680	0.686
Foxa1 M09103_2.00	Mus musculus	TRTTKACWYW	WRWGTMAAYA	Misc Kulakovskiy et al.(2013) FOXA1_MOUSE.H11MO.0.A	0.680	0.686
FOXA1 M09544_2.00	Homo sapiens	WGCCAARRYAAAYANN	NNTRTTTRYYTTGGCW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_2	0.680	0.686
FOXA1 M09543_2.00	Homo sapiens	WRWGTAAACA	TGTTTACWYW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_1	0.680	0.686
FOXA1 M09545_2.00	Homo sapiens	WRWGTAAAYA	TRTTTACWYW	Misc Heinz et al.(2010) MCF7-FOXA1_GSE26831	0.680	0.686
FOXA1 M10542_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_02	0.680	0.686
FOXA1 M10543_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_03	0.680	0.686
FOXA1 M10544_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_01	0.680	0.686
FOXA1 M10545_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3ALPHA_Q6	0.680	0.686
FOXA1 M10546_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_Q6	0.680	0.686
FOXA1 M04818_2.00	Homo sapiens	NWRDGYMAAYAW	WTRTTKRCHYWN	SELEX Yin et al.(2017) FOXA1_eDBD_Methyl-HT-SELEX	0.680	0.686
FOXA1 M04821_2.00	Homo sapiens	BVYTAWGTAAACAAWV	BWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_1	0.680	0.686
FOXA1 M04822_2.00	Homo sapiens	YTRWRYAAATATTTACWYAR	YTRWGTAAATATTTRYWYAR	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_2	0.680	0.686
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.664	0.698
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.664	0.698
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.664	0.698
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	0.664	0.698
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.664	0.698
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.664	0.698
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.664	0.698
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
LDEC021031-PA	Forkhead	13	102	KPPYSYISLTAMAIWNSPEKMLPLSEIYKFITDRFPYYRKNTQRWQNSLRHNLSFNDCFIKIPRQPDRPGKGAYWALHPAAFDMFVNGSL

Links
Other Forkhead family TFs
Other *Leptinotarsa decemlineata* TFs

498 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_08606	Aegilops tauschii	F775_08606	I	0.000
AMTR_s00030p00014690	Amborella trichopoda	AMTR_s00030p00014690	I	0.000
Aquca_023_00109	Aquilegia coerulea	Aquca_023_00109	I	0.000
BRADI4G24937	Brachypodium distachyon	BRADI4G24937	I	0.000
BRADI4G41890	Brachypodium distachyon	BRADI4G41890	I	0.000
PK27109.1	Cannabis sativa	PK27109.1	D	0.000
Cla014037	Citrullus lanatus	Cla014037	I	0.000
Cla015261	Citrullus lanatus	Cla015261	I	0.000
Ciclev10001715m.g	Citrus clementina	Ciclev10001715m.g	I	0.000
orange1.1g019163m.g	Citrus sinensis	orange1.1g019163m.g	I	0.000
Cucsa.363640	Cucumis sativus	Cucsa.363640	I	0.000
Eucgr.F02715	Eucalyptus grandis	Eucgr.F02715	I	0.000
Gorai.009G285000	Gossypium raimondii	Gorai.009G285000	I	0.000
MLOC_71198	Hordeum vulgare	MLOC_71198	I	0.000
LPERR11G03390	Leersia perrieri	LPERR11G03390	I	0.000
LPERR12G03530	Leersia perrieri	LPERR12G03530	I	0.000
Lus10042802.g	Linum usitatissimum	Lus10042802.g	I	0.000
Lus10029773.g	Linum usitatissimum	Lus10029773.g	I	0.000
mgf003343m	Mimulus guttatus	mgf003343m	I	0.000
GSMUA_Achr6G18130_001	Musa acuminata	GSMUA_Achr6G18130_001	I	0.000
GSMUA_Achr6G13040_001	Musa acuminata	GSMUA_Achr6G13040_001	I	0.000
GSMUA_Achr3G19170_001	Musa acuminata	GSMUA_Achr3G19170_001	I	0.000
OBART11G03920	Oryza barthii	OBART11G03920	I	0.000
OBART12G03760	Oryza barthii	OBART12G03760	I	0.000
OB12G13750	Oryza brachyantha	OB12G13750	I	0.000
OB11G13300	Oryza brachyantha	OB11G13300	I	0.000
ORGLA11G0036500	Oryza glaberrima	ORGLA11G0036500	I	0.000
ORGLA12G0036800	Oryza glaberrima	ORGLA12G0036800	I	0.000
OGLUM12G04480	Oryza glumaepatula	OGLUM12G04480	I	0.000
OGLUM11G03630	Oryza glumaepatula	OGLUM11G03630	N	0.000
BGIOSGA034853	Oryza indica	BGIOSGA034853	N	0.000
BGIOSGA037037	Oryza indica	BGIOSGA037037	I	0.000
OLONG_001598	Oryza longistaminata	OLONG_001598	I	0.000
OMERI11G03570	Oryza meridionalis	OMERI11G03570	N	0.000
OMERI12G02030	Oryza meridionalis	OMERI12G02030	I	0.000
ONIVA11G04030	Oryza nivara	ONIVA11G04030	I	0.000
ONIVA12G03450	Oryza nivara	ONIVA12G03450	I	0.000
OPUNC11G03640	Oryza punctata	OPUNC11G03640	N	0.000
ORUFI11G03840	Oryza rufipogon	ORUFI11G03840	I	0.000
ORUFI12G04380	Oryza rufipogon	ORUFI12G04380	I	0.000
OS11G0160500	Oryza sativa	OS11G0160500	N	0.000
OS12G0162500	Oryza sativa	OS12G0162500	I	0.000
Pavir.Hb01916	Panicum virgatum	Pavir.Hb01916	I	0.000
Pavir.Ha01827	Panicum virgatum	Pavir.Ha01827	I	0.000
Pavir.Cb01934	Panicum virgatum	Pavir.Cb01934	N	0.000
Pavir.Ca00211	Panicum virgatum	Pavir.Ca00211	I	0.000
POPTR_0005s21300	Populus trichocarpa	POPTR_0005s21300	I	0.000
SapurV1A.1302s0050	Salix purpurea	SapurV1A.1302s0050	I	0.000
SapurV1A.0256s0010	Salix purpurea	SapurV1A.0256s0010	I	0.000
SapurV1A.0066s0110	Salix purpurea	SapurV1A.0066s0110	I	0.000
Si026605m.g	Setaria italica	Si026605m.g	I	0.000
Si010549m.g	Setaria italica	Si010549m.g	I	0.000
Sb08g003940	Sorghum bicolor	Sb08g003940	I	0.000
Sb05g003810	Sorghum bicolor	Sb05g003810	I	0.000
Traes_5AL_538EC4C86	Triticum aestivum	Traes_5AL_538EC4C86	I	0.000
Traes_4AL_273ACCFFD	Triticum aestivum	Traes_4AL_273ACCFFD	I	0.000
Traes_4BS_ED206A2BB	Triticum aestivum	Traes_4BS_ED206A2BB	I	0.000
Traes_4DS_FE97492F2	Triticum aestivum	Traes_4DS_FE97492F2	I	0.000
Traes_5DL_841444545	Triticum aestivum	Traes_5DL_841444545	I	0.000
Traes_5BL_4700CC358	Triticum aestivum	Traes_5BL_4700CC358	N	0.000
TRIUR3_31416	Triticum urartu	TRIUR3_31416	I	0.000
TRIUR3_12877	Triticum urartu	TRIUR3_12877	I	0.000
VIP1	Vitis vinifera	VIT_18s0076g00330	I	0.000
GRMZM5G821024	Zea mays	GRMZM5G821024	I	0.000
GRMZM2G146020	Zea mays	GRMZM2G146020	I	0.000
GRMZM2G136266	Zea mays	GRMZM2G136266	I	0.000

LDEC021031 (Leptinotarsa decemlineata) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

498 Related TFs

LDEC021031 **(Leptinotarsa decemlineata)
Forkhead**