CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

EEL_0000568301 *(Elaeophora elaphi)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	EEL_0000568301	T190508_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXA1 M04817_2.00	Homo sapiens	NTRTKTACMYWN	NWRKGTAMAYAN	SELEX Yin et al.(2017) FOXA1_eDBD_HT-SELEX	0.802	0.791
FOXA1 M04819_2.00	Homo sapiens	BVYTAWGTAAACAAWN	NWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_1	0.802	0.791
FOXA1 M04820_2.00	Homo sapiens	HWRWRYAAATATTKACWYWR	YWRWGTMAATATTTRYWYWD	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_2	0.802	0.791
FOXA1 M08117_2.00	Homo sapiens	NNNNTRTTTACWYWD	HWRWGTAAAYANNNN	ChIP-seq Mathelier et al.(2014) MA0148.3	0.802	0.791
FOXA1 M07960_2.00	Homo sapiens	NNYWRWGYAAACANN	NNTGTTTRCWYWRNN	ChIP-seq Gerstein et al.(2012) ECC-1_FOXA1_HudsonAlpha	0.802	0.791
FOXA1 M07961_2.00	Homo sapiens	HWRWGTAAAYA	TRTTTACWYWD	ChIP-seq Gerstein et al.(2012) HepG2_FOXA1_HudsonAlpha	0.802	0.791
FOXA1 M07962_2.00	Homo sapiens	NWVWGTAAACA	TGTTTACWBWN	ChIP-seq Gerstein et al.(2012) T-47D_FOXA1_HudsonAlpha	0.802	0.791
FOXA1 M08199_2.00	Homo sapiens	BWRDGTAAACANN	NNTGTTTACHYWV	ChIP-seq Contrino et al.(2012) Mv69	0.802	0.791
FOXA1 M08028_2.00	Homo sapiens	WRWRYAAAYA	TRTTTRYWYW	ChIP-seq Chen et al.(2011) GSE15244_FoxA1	0.802	0.791
FOXA1 M09090_2.00	Homo sapiens	VHWRWGTAAACA	TGTTTACWYWDB	Misc Kulakovskiy et al.(2013) FOXA1_HUMAN.H11MO.0.A	0.802	0.791
Foxa1 M09103_2.00	Mus musculus	TRTTKACWYW	WRWGTMAAYA	Misc Kulakovskiy et al.(2013) FOXA1_MOUSE.H11MO.0.A	0.802	0.791
FOXA1 M09544_2.00	Homo sapiens	WGCCAARRYAAAYANN	NNTRTTTRYYTTGGCW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_2	0.802	0.791
FOXA1 M09543_2.00	Homo sapiens	WRWGTAAACA	TGTTTACWYW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_1	0.802	0.791
FOXA1 M09545_2.00	Homo sapiens	WRWGTAAAYA	TRTTTACWYW	Misc Heinz et al.(2010) MCF7-FOXA1_GSE26831	0.802	0.791
FOXA1 M10542_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_02	0.802	0.791
FOXA1 M10543_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_03	0.802	0.791
FOXA1 M10544_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_01	0.802	0.791
FOXA1 M10545_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3ALPHA_Q6	0.802	0.791
FOXA1 M10546_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_Q6	0.802	0.791
FOXA1 M04818_2.00	Homo sapiens	NWRDGYMAAYAW	WTRTTKRCHYWN	SELEX Yin et al.(2017) FOXA1_eDBD_Methyl-HT-SELEX	0.802	0.791
FOXA1 M04821_2.00	Homo sapiens	BVYTAWGTAAACAAWV	BWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_1	0.802	0.791
FOXA1 M04822_2.00	Homo sapiens	YTRWRYAAATATTTACWYAR	YTRWGTAAATATTTRYWYAR	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_2	0.802	0.791
fkh M03734_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fkh_1	0.802	0.814
fkh M03735_2.00	Drosophila melanogaster	HWASAATAAYAWT	AATRTTATTSTWD	SELEX Nitta et al.(2015) fkh_2	0.802	0.814
fkh M06473_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Mathelier et al.(2014) MA0446.1	0.802	0.814
fkh M06194_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Zhu et al.(2011) fkh_NAR_FBgn0000659	0.802	0.814
fkh M08200_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	ChIP-seq Contrino et al.(2012) Mf15	0.802	0.814
fkh M09668_2.00	Drosophila melanogaster	TRTTTRCAHAAG	CTTDTGYAAAYA	Misc Kulakovskiy et al.(2009) fkh	0.802	0.814
Foxa2 M00162_2.00	Mus musculus	GTAAAYAW	WTRTTTAC	PBM Badis et al.(2009) Foxa2_2830	0.795	0.791
FOXA2 M04815_2.00	Homo sapiens	NHVNRYMAATATTKACNNDN	NHNNGTMAATATTKRYNBDN	SELEX Yin et al.(2017) FOXA2_eDBD_HT-SELEX	0.795	0.791
Foxa2 M08121_2.00	Mus musculus	TRTTTACWYWDN	NHWRWGTAAAYA	ChIP-seq Mathelier et al.(2014) MA0047.2	0.795	0.791
FOXA2 M07959_2.00	Homo sapiens	NNWRWGYAAAYANNN	NNNTRTTTRCWYWNN	ChIP-seq Gerstein et al.(2012) HepG2_FOXA2_HudsonAlpha	0.795	0.791
FOXA2 M09088_2.00	Homo sapiens	NHWRWGTAAACA	TGTTTACWYWDN	Misc Kulakovskiy et al.(2013) FOXA2_HUMAN.H11MO.0.A	0.795	0.791
Foxa2 M09104_2.00	Mus musculus	BNHTRTTKACWYW	WRWGTMAAYADNV	Misc Kulakovskiy et al.(2013) FOXA2_MOUSE.H11MO.0.A	0.795	0.791
FOXA2 M09542_2.00	Homo sapiens	WVWGTMAACANV	BNTGTTKACWBW	Misc Heinz et al.(2010) Liver-Foxa2_GSE25694	0.795	0.791
FOXA2 M10540_2.00	Homo sapiens	WAARYAAAYADKNMV	BKNMHTRTTTRYTTW	Transfac Matys et al.(2006) V$HNF3B_01	0.795	0.791
FOXA2 M10541_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3B_Q6	0.795	0.791
AAA20679 M10575_2.00	Xenopus laevis	WNWGTMAACAWWMW	WKWWTGTTKACWNW	Transfac Matys et al.(2006) V$XFD3_01	0.795	0.791
FOXA2 M04816_2.00	Homo sapiens	NWRNRYMAATATTKACWNWN	NWNWGTMAATATTKRYNYWN	SELEX Yin et al.(2017) FOXA2_eDBD_Methyl-HT-SELEX	0.795	0.791
Q2L6N7_PELSI M01990_2.00	Trionyx sinensis	KTRTTTACA	TGTAAAYAM	PBM Weirauch et al.(2014) pTH5334	0.789	0.733
pha-4 M08123_2.00	Caenorhabditis elegans	WRWGYAAAYA	TRTTTRCWYW	ChIP-seq Mathelier et al.(2014) MA0546.1	0.774	0.791
pha-4 M08201_2.00	Caenorhabditis elegans	GTAAACAR	YTGTTTAC	ChIP-seq Contrino et al.(2012) Mw164	0.774	0.791
pha-4 M09548_2.00	Caenorhabditis elegans	RYAMAYAN	NTRTKTRY	Misc Heinz et al.(2010) cElegans-Embryos-PHA4_modEncode	0.774	0.791
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.769	0.744
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.769	0.744
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.769	0.744
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	0.769	0.744
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.769	0.744
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.769	0.744
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.769	0.744
Foxb1 M01983_2.00	Mus musculus	TRTTKAYWYW	WRWRTMAAYA	PBM Weirauch et al.(2014) pTH2808	0.676	0.686
FOXB1 M03028_2.00	Homo sapiens	GAATGACACRGCKV	BMGCYGTGTCATTC	SELEX Jolma et al.(2013) FOXB1_1	0.676	0.686
FOXB1 M03029_2.00	Homo sapiens	WRWGTMAATATTKACWYW	WRWGTMAATATTKACWYW	SELEX Jolma et al.(2013) FOXB1_2	0.676	0.686
FOXB1 M03030_2.00	Homo sapiens	WTRTTKACWTW	WAWGTMAAYAW	SELEX Jolma et al.(2013) FOXB1_3	0.676	0.686
FOXB1 M03031_2.00	Homo sapiens	NTRTTTACW	WGTAAAYAN	SELEX Jolma et al.(2013) FOXB1_4	0.676	0.686
FOXB1 M04837_2.00	Homo sapiens	NWRDGYMAATATTKRCWYWD	HWRWGYMAATATTKRCHYWN	SELEX Yin et al.(2017) FOXB1_eDBD_HT-SELEX	0.676	0.686
FOXB1 M04838_2.00	Homo sapiens	NWRNGYMAATATTKRCDYWD	HWRHGYMAATATTKRCNYWN	SELEX Yin et al.(2017) FOXB1_eDBD_Methyl-HT-SELEX	0.676	0.686
fd96Ca M03743_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fd96Ca_1	0.668	0.616
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EEL_0000568301-mRNA-1	Forkhead	136	228	KPPFSYISLITMAIQRSESRMLTLSEIYQFIMDNYAYYRQNQQRSAGWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHEDCGNMFENGCY

Links
Other Forkhead family TFs
Other *Elaeophora elaphi* TFs

513 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000017607	Ailuropoda melanoleuca	ENSAMEG00000017607	I	0.000
Alligator_sinensis_CCG003489.1	Alligator sinensis	Alligator_sinensis_CCG003489.1	N	0.000
ENSAPLG00000015747	Anas platyrhynchos	ENSAPLG00000015747	N	0.000
ZNF692	Anolis carolinensis	ENSACAG00000011640	N	0.000
Afo_R010193	Aptenodytes forsteri	Afo_R010193	N	0.000
ENSAMXG00000016587	Astyanax mexicanus	ENSAMXG00000016587	N	0.000
ENSP00000391200-D1	Bos grunniens	ENSP00000391200-D1	I	0.000
ZNF692	Bos taurus	ENSBTAG00000021115	I	0.000
ZNF692	Callithrix jacchus	ENSCJAG00000018739	I	0.000
ZNF692	Canis familiaris	ENSCAFG00000003155	I	0.000
ZNF692	Cavia porcellus	ENSCPOG00000022134	I	0.000
ENSCSAG00000008915	Chlorocebus sabaeus	ENSCSAG00000008915	I	0.000
znf692	Danio rerio	ENSDARG00000078434	N	0.000
ZNF692	Dasypus novemcinctus	ENSDNOG00000011720	I	0.000
ZNF692	Erinaceus europaeus	ENSEEUG00000000422	I	0.000
ZNF692	Felis catus	ENSFCAG00000000130	I	0.000
ENSFALG00000008357	Ficedula albicollis	ENSFALG00000008357	N	0.000
ENSGALG00000019836	Gallus gallus	ENSGALG00000019836	N	0.000
Gfo_R002611	Geospiza fortis	Gfo_R002611	N	0.000
ZNF692	Gorilla gorilla	ENSGGOG00000009088	I	0.000
ZNF692	Homo sapiens	ENSG00000171163	D	0.000
ENSSTOG00000023210	Ictidomys tridecemlineatus	ENSSTOG00000023210	I	0.000
ENSLACG00000004152	Latimeria chalumnae	ENSLACG00000004152	N	0.000
ENSLOCG00000010151	Lepisosteus oculatus	ENSLOCG00000010151	N	0.000
ENSMMUP00000000850	Macaca fascicularis	ENSMMUP00000000850	I	0.000
ZNF692	Macaca mulatta	ENSMMUG00000000634	I	0.000
ENSMEUG00000013090	Macropus eugenii	ENSMEUG00000013090	I	0.000
ZNF692	Meleagris gallopavo	ENSMGAG00000000638	N	0.000
ZNF692	Monodelphis domestica	ENSMODG00000009168	I	0.000
ENSMPUG00000001221	Mustela putorius furo	ENSMPUG00000001221	I	0.000
Zfp692	Mus musculus	ENSMUSG00000037243	I	0.000
Myotis_brandtii_ZNF692_10016142	Myotis brandtii	Myotis_brandtii_ZNF692_10016142	I	0.000
ZNF692	Myotis lucifugus	ENSMLUG00000002398	I	0.000
ENSNLEG00000004326	Nomascus leucogenys	ENSNLEG00000004326	I	0.000
Ogr15087	Ophisaurus gracilis	Ogr15087	N	0.000
ZNF692	Oryctolagus cuniculus	ENSOCUG00000021004	I	0.000
ZNF692	Otolemur garnettii	ENSOGAG00000004267	I	0.000
ENSOARG00000008239	Ovis aries	ENSOARG00000008239	I	0.000
ZNF692	Pan troglodytes	ENSPTRG00000002226	I	0.000
ENSPANG00000020298	Papio anubis	ENSPANG00000020298	I	0.000
ENSPPYG00000000002	Pongo abelii	ENSPPYG00000000002	I	0.000
ZNF692	Pteropus vampyrus	ENSPVAG00000004179	I	0.000
Zfp692	Rattus norvegicus	ENSRNOG00000002682	I	0.000
ENSSHAG00000005493	Sarcophilus harrisii	ENSSHAG00000005493	I	0.000
ZNF692	Sus scrofa	ENSSSCG00000030672	I	0.000
ZNF692	Tursiops truncatus	ENSTTRG00000013805	I	0.000

EEL_0000568301 (Elaeophora elaphi) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

513 Related TFs

EEL_0000568301 **(Elaeophora elaphi)
Forkhead**